DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and Ddc

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_724163.1 Gene:Ddc / 35190 FlyBaseID:FBgn0000422 Length:510 Species:Drosophila melanogaster


Alignment Length:476 Identity:250/476 - (52%)
Similarity:345/476 - (72%) Gaps:2/476 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVM 65
            |:..|::...|.|||:||:||||||||||.|:|.|||::.|:|::||.:.|.|..:..|:||::|
  Fly    36 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIM 100

  Fly    66 PGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPD 130
            ||:|||.||..|||||..||.|:::.|||:.||.|:||||.:||||||||:::|:|||||:.||.
  Fly   101 PGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPA 165

  Fly   131 AFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSS 195
            .||..|. .:||||:|.||||:|||.||..:.:.::...|.||.:.:..|..:||.|||||||||
  Fly   166 EFLACSG-GKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS 229

  Fly   196 VEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGI 260
            ||:|.|:|.|::|.:::::. .|||..|.:|||.|:.:||:||:...|||||.||:||.|:|.|.
  Fly   230 VERAGLLGGVKLRSVQSENH-RMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGP 293

  Fly   261 VCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHR 325
            |..:|:||:|||||||||||||||:|..::|||.|||..|||.||::|:||.:|:|::|.:.|..
  Fly   294 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVN 358

  Fly   326 TFNVEPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEAL 390
            .|||:||||:|:..|.|.|:.||||||.|||||||:|||||.||::.||.|||.....|::|..|
  Fly   359 AFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDL 423

  Fly   391 VLADHRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTHTT 455
            .:||.||||.|:.::|||.||::|.||..|.||||:|.||::|.:|:.:|..|.:|..|.|..|.
  Fly   424 CVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQ 488

  Fly   456 LDDIVKDWMEIRQVASTVLEE 476
            .:|:...|.|:...|..:.:|
  Fly   489 SEDMEYSWKEVSAAADEMEQE 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 206/377 (55%)
DdcNP_724163.1 Pyridoxal_deC 70..446 CDD:278699 206/377 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445350
Domainoid 1 1.000 368 1.000 Domainoid score I180
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 417 1.000 Inparanoid score I444
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 1 1.000 - - mtm1068
orthoMCL 1 0.900 - - OOG6_100572
Panther 1 1.100 - - P PTHR11999
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X696
1110.800

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