DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and Sgpl1

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:XP_008771093.2 Gene:Sgpl1 / 286896 RGDID:628599 Length:648 Species:Rattus norvegicus


Alignment Length:569 Identity:100/569 - (17%)
Similarity:187/569 - (32%) Gaps:196/569 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DYI----------ADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMP-GI 68
            ||:          |:.||.::|.... ||   :.::.....|...||  ||:   .|.:|.. |.
  Rat   191 DYVKTLPAQGLSTAEVLERLKEYSSM-DV---FWQEGKASGAVYSGE--PKL---TELLVQAYGE 246

  Fly    69 THWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFL 133
            ..|.:|.....||.|..:.:.:..|.....|                           |.||:. 
  Rat   247 FTWSNPLHPDIFPGLRKLEAEIVRMTCSLFN---------------------------GGPDSC- 283

  Fly   134 HLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEK 198
                     |.:.:..:|:.|:...|.|..|:::      |.:..||.|      .:.||::.:|
  Rat   284 ---------GCVTSGGTESILMACKAYRDLALEK------GIKTPEIVA------PESAHAAFDK 327

  Fly   199 AA------LIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCS------ 251
            ||      ::.:.:.:.:|.|      .:.::.||..:... ||             ||      
  Rat   328 AAHYFGMKIVRVAQKKNMEVD------VRAMKRAISRNTAM-LV-------------CSAPQFPH 372

  Fly   252 --FDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPE-----------FRTWLRGIE--RADS---- 297
              .|.:.|:..:..::.:..||||...|...:..|           ||  ::|:.  .||:    
  Rat   373 GVIDPIPEVAKLAVKYKIPFHVDACLGGFLIVFMEKAGYPLEKPFDFR--VKGVTSISADTHKYG 435

  Fly   298 --------IAFNPSKWLMVHFDATALWVRDSTAVHRTFNVEPLYLQHENSGVAVDFMHWQIPLSR 354
                    :.::..|:....|...|.|.....|       .|........|:..           
  Rat   436 YAPKGSSVVMYSNEKYRKYQFFVDADWQGGIYA-------SPSIAGSRPGGIIA----------- 482

  Fly   355 RFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEA--------LVLADHRFELPAKRHLGLVVFR 411
                 ..|..|..:|..|.....::.::.|:..::        .:|.|.:..:.|          
  Rat   483 -----ACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFILGDPQLSVIA---------- 532

  Fly   412 IRGDNEI-TEKLLKRLNHRG---NLHCIPSSLKGQYVIRFTITSTHTTLDDIVKDWMEIRQVAST 472
             .|.|:. ..:|...::.:|   |....|.|      |.|.||..||.           ::||..
  Rat   533 -LGSNDFDIYRLSNMMSAKGWNFNYLQFPRS------IHFCITLVHTR-----------KRVAIQ 579

  Fly   473 VLEEMNITISNRVYLKETKEKNEAFGSSLLLSNSPLSPKVVNGSFAAIF 521
            .|:::..:::.  .:|..|.|....|:...::.:.:..|:| ...:::|
  Rat   580 FLKDIRESVTQ--IMKNPKAKTTGMGAIYGMAQATIDRKMV-AEISSVF 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 69/425 (16%)
Sgpl1XP_008771093.2 DOPA_deC_like 226..587 CDD:99743 85/487 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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