DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and Csad

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001346055.1 Gene:Csad / 246277 MGIID:2180098 Length:493 Species:Mus musculus


Alignment Length:476 Identity:125/476 - (26%)
Similarity:205/476 - (43%) Gaps:76/476 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 PGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAIN 99
            |..::|||......:||...:|......::...:........:..|..|:. .:|.|.::.:::|
Mouse    49 PEELKQLLDLELQSQGESREQILERCRTVIHYSVKTGHPRFFNQLFSGLDP-HALAGRIITESLN 112

  Fly   100 CLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRA 164
            ...:|:..:|....:|..|:..|..::|          .:.|.||.....|.:.:..:      .
Mouse   113 TSQYTYEIAPVFVLMEEEVLKKLRALVG----------WNSGDGVFCPGGSISNMYAM------N 161

  Fly   165 IQRFHERHPGYQDAEINA--RLVAYCSDQAHSSVEK-AALIGL--VRMRYIEADDDLAMRGKLLR 224
            :.|| :|:|..:...:.|  .|..:.|.:.|.|:.| ||.:||  ..:|.::||:    ||:::.
Mouse   162 LARF-QRYPDCKQRGLRALPPLALFTSKECHYSITKGAAFLGLGTDSVRVVKADE----RGRMIP 221

  Fly   225 EAIEDDI----KQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPEF 285
            |.:|..|    .:|.|||.|.||.|||...:||.|:.|..||..|.||.|||||:.||..:....
Mouse   222 EDLERQIILAEAEGSVPFLVSATSGTTVLGAFDPLDAIADVCQRHGLWFHVDAAWGGSVLLSRTH 286

  Fly   286 RTWLRGIERADSIAFNPSKWLMVHFDATALWVRD-STAVHRTFNVEPLYL--QHENSGVAVDFMH 347
            |..|.||:||||:|:||.|.|......:||.:|| |..:.|....:..||  |.:...||:|...
Mouse   287 RHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRDTSNLLKRCHGSQASYLFQQDKFYDVALDTGD 351

  Fly   348 WQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLADHRFELPAKRHLGLVVF-- 410
            ..:...||...||:|.:.::.|.:||:|.|.:...|.:.....:.....|||..:.....|.|  
Mouse   352 KVVQCGRRVDCLKLWLMWKAQGGQGLERRIDQAFALTRYLVEEIKKREGFELVMEPEFVNVCFWF 416

  Fly   411 ---RIRGDNE--------------ITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTHTTLDD 458
               .:||..|              :.|:::|               ||..:|.:....|......
Mouse   417 VPPSLRGKKESPDYSQRLSQVAPVLKERMVK---------------KGTMMIGYQPHGTRANFFR 466

  Fly   459 IVKDWMEIRQVASTVLEEMNI 479
            :|        ||:.:|.:.:|
Mouse   467 MV--------VANPILAQADI 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 111/394 (28%)
CsadNP_001346055.1 DOPA_deC_like 89..481 CDD:99743 118/436 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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