DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and Gad1

DIOPT Version :10

Sequence 1:NP_523679.2 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_058703.1 Gene:Gad1 / 24379 RGDID:2652 Length:593 Species:Rattus norvegicus


Alignment Length:464 Identity:119/464 - (25%)
Similarity:200/464 - (43%) Gaps:92/464 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EMVDYIADYLENI--RERRVFPDVSPGYMRQLLPESAPIEG---------EPWPKIFSDVERIVM 65
            |:||.:.:|:...  |..:|.....|   .|||   ..:||         |...:|..|....:.
  Rat   118 EVVDILLNYVRKTFDRSTKVLDFHHP---HQLL---EGMEGFNLELSDHPESLEQILVDCRDTLK 176

  Fly    66 PGITHWQSPHMHAYFPALNS---MPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIG 127
            .|:   ::.|.. :|..|::   :..|.|:.|....|...||:..:|....:|.|.:..:.::||
  Rat   177 YGV---RTGHPR-FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIIG 237

  Fly   128 LPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINA--RLVAYCSD 190
            .        |...|.|:.....:.:.:..::|.|       ::..|..:...:.|  :||.:.|:
  Rat   238 W--------SNKDGDGIFSPGGAISNMYSIMAAR-------YKYFPEVKTKGMAAVPKLVLFTSE 287

  Fly   191 QAHSSVEKA-ALIGLVRMRYIEADDDLAM-----RGKLLREAIED---DIKQ-GLVPFWVCATLG 245
            .:|.|::|| |.:|.       ..|::.:     |||::...:|.   |.|| |.||.:|.||.|
  Rat   288 HSHYSIKKAGAALGF-------GTDNVILIKCNERGKIIPADLEAKILDAKQKGFVPLYVNATAG 345

  Fly   246 TTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHF 310
            ||...:||.::||..:|.:::||||||||:.|...:..:.|..|.|||||:|:.:||.|.:.|..
  Rat   346 TTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVLL 410

  Fly   311 DATALWVRDSTAVHRTFNVEPLYL-----QHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGI 370
            ..:|:.|::...:.....:...||     |::   |:.|.....|...|.....|.|.:.::.|.
  Rat   411 QCSAILVKEKGILQGCNQMCAGYLFQPDKQYD---VSYDTGDKAIQCGRHVDIFKFWLMWKAKGT 472

  Fly   371 KGLQRHIREGVRLAQKFEALVLADHRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHC- 434
            .|.:..|.:.:.||:...|.:.....||:         ||  .|:.|.|..            | 
  Rat   473 VGFENQINKCLELAEYLYAKIKNREEFEM---------VF--NGEPEHTNV------------CF 514

  Fly   435 --IPSSLKG 441
              ||.||:|
  Rat   515 WYIPQSLRG 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_523679.2 Pyridoxal_deC 35..413 CDD:395219 104/406 (26%)
Gad1NP_058703.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Pyridoxal_deC 143..517 CDD:395219 108/431 (25%)
Blue background indicates that the domain is not in the aligned region.

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