DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and Sgpl1

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001303602.1 Gene:Sgpl1 / 20397 MGIID:1261415 Length:568 Species:Mus musculus


Alignment Length:575 Identity:111/575 - (19%)
Similarity:209/575 - (36%) Gaps:160/575 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 FKEYRQR---GKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERI- 63
            ||..|:.   |:::...::...:::.:...|..|...|::.|     |.:|....::   :||: 
Mouse    75 FKLIRKMPFIGRKIEQQVSKAKKDLVKNMPFLKVDKDYVKTL-----PAQGMGTAEV---LERLK 131

  Fly    64 ---VMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASS------PACTELEIIVM 119
               .|.|  .||..  .|.....|..|.|. ::|..|..  .|||::.      |...:||..::
Mouse   132 EYSSMDG--SWQEG--KASGAVYNGEPKLT-ELLVQAYG--EFTWSNPLHPDIFPGLRKLEAEIV 189

  Fly   120 NWLGKMI-GLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINAR 183
            .....:. |.||:.          |.:.:..:|:.|:...|.|..|:::      |.:..||.| 
Mouse   190 RMTCSLFNGGPDSC----------GCVTSGGTESILMACKAYRDLALEK------GIKTPEIVA- 237

  Fly   184 LVAYCSDQAHSSVEKAA------LIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCA 242
                 .:.||::.:|||      ::.:...:.:|.|.. ||:..:.|.          ....||:
Mouse   238 -----PESAHAAFDKAAHYFGMKIVRVALKKNMEVDVQ-AMKRAISRN----------TAMLVCS 286

  Fly   243 T----LGTTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPE-----------FRTWLRGI 292
            |    .|.     .|.:.|:..:...:.:.|||||...|...:..|           ||  ::|:
Mouse   287 TPQFPHGV-----MDPVPEVAKLAVRYKIPLHVDACLGGFLIVFMEKAGYPLEKPFDFR--VKGV 344

  Fly   293 ERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFNVEPLYLQHENSGVAVDFMHWQ-------- 349
               .||:.:..|:......::.  |..|...:||:..          .|..|   ||        
Mouse   345 ---TSISADTHKYGYAPKGSSV--VMYSNEKYRTYQF----------FVGAD---WQGGVYASPS 391

  Fly   350 IPLSRRFRALKV-WFVLRSYGIKGLQRHIREGVRLAQKFEA--------LVLADHRFELPAKRHL 405
            |..||....:.. |..|..:|..|.....::.::.|:..::        .:..|.:..:.|    
Mouse   392 IAGSRPGGIIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKNIFIFGDPQLSVIA---- 452

  Fly   406 GLVVFRIRGDNEI-TEKLLKRLNHRG---NLHCIPSSLKGQYVIRFTITSTHTTLDDIVKDWMEI 466
                   .|.|:. ..:|...::.:|   |....|.|      |.|.||..||.           
Mouse   453 -------LGSNDFDIYRLSNMMSAKGWNFNYLQFPRS------IHFCITLVHTR----------- 493

  Fly   467 RQVASTVLEEMNITISNRVYLKETKEKNEAFGSSLLLSNSPLSPKVVNGSFAAIF 521
            ::||...|:::..:::.  .:|..|.|....|:...::.:.:..|:| ...:::|
Mouse   494 KRVAIQFLKDIRESVTQ--IMKNPKAKTTGMGAIYGMAQATIDRKLV-AEISSVF 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 82/426 (19%)
Sgpl1NP_001303602.1 DOPA_deC_like 146..507 CDD:99743 87/449 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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