DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and hdl-2

DIOPT Version :10

Sequence 1:NP_523679.2 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_501539.3 Gene:hdl-2 / 182464 WormBaseID:WBGene00006409 Length:611 Species:Caenorhabditis elegans


Alignment Length:510 Identity:122/510 - (23%)
Similarity:219/510 - (42%) Gaps:80/510 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MVDYIADYLENIRERRVFP--DVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGITHWQSPH 75
            :|.:|.||.:...::.|.|  ||:...:...:||.|    |...:|..|::.||:|.|.|...|.
 Worm   126 VVQFINDYFDESHKQPVIPENDVNSSRIHVKVPEKA----EELTEILKDLKEIVIPNICHTHHPR 186

  Fly    76 MHAYFPALNSMPSLLGDMLADAIN-CLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQS 139
            .||.|...:     |.|::|..|: .||....|||....:|.|:..||...:.:|.....|....
 Worm   187 YHAKFAGKS-----LADLVASTISAALGHDVNSSPIIESIERIICKWLSTSMAIPQIKSSLGELR 246

  Fly   140 QGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAALIGL 204
            ...|.:..|..:..:..:    ..||::|.:...|.:.:: ||..:.||||.:...:::..:...
 Worm   247 DPIGTVFYTPCDVFISVI----RHAIEKFEKTDSGKERSK-NADYIVYCSDDSQVPLKEPCISCR 306

  Fly   205 VRMRYIEADD--DLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHL 267
            |::|.:..|:  ...|....|.:.:|.||.:|..|..:.|..|:....:.|.:.::..|.....:
 Worm   307 VKLRKVITDEKNGSGMTSANLLKQMEKDIARGFTPLVIIANYGSANIAANDEIWDLVTVSRSKKI 371

  Fly   268 WLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLM-----VHFDATALWVRDSTAVHRTF 327
            |||:||:|||    |    .||      ||.:.|....|:     ||...::|:.. |..:...:
 Worm   372 WLHLDASYAG----C----EWL------DSNSRNNVHALISEVHSVHITCSSLFPY-SGRISVVW 421

  Fly   328 NVEPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKF-EALV 391
            :.|.|.|.      ....::.:.|       :::|.::|.:||:.::..::..:.|...| |.:.
 Worm   422 SCEKLELD------GAKILYGEHP-------IRLWILIRLHGIRSIREAVKRKIILGNAFSERMS 473

  Fly   392 LADHRFELPAKRHLGLVVF-----RIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITS 451
            .....||:......|:.||     :|:...|.|.|:....:   |...:.|:||      |:|.|
 Worm   474 HHSQLFEMHHTNEHGVTVFQYKNKKIKDRTEDTNKITSMFH---NYLVLSSTLK------FSIVS 529

  Fly   452 THTTLDDIVKDWMEIRQVASTVLEEMNITISNRV-----YLKETKE------KNE 495
            .|..:  ::|..:...:...::::|...|:.|.|     .||:.|:      |||
 Worm   530 FHGKV--LIKSVVNYGRCNLSIMDESVSTLVNSVDEFEEALKKKKKIVCETPKNE 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_523679.2 Pyridoxal_deC 35..413 CDD:395219 91/391 (23%)
hdl-2NP_501539.3 AAT_I 125..527 CDD:450240 108/451 (24%)

Return to query results.
Submit another query.