DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and hdl-2

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_501539.3 Gene:hdl-2 / 182464 WormBaseID:WBGene00006409 Length:611 Species:Caenorhabditis elegans


Alignment Length:510 Identity:122/510 - (23%)
Similarity:219/510 - (42%) Gaps:80/510 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MVDYIADYLENIRERRVFP--DVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGITHWQSPH 75
            :|.:|.||.:...::.|.|  ||:...:...:||.|    |...:|..|::.||:|.|.|...|.
 Worm   126 VVQFINDYFDESHKQPVIPENDVNSSRIHVKVPEKA----EELTEILKDLKEIVIPNICHTHHPR 186

  Fly    76 MHAYFPALNSMPSLLGDMLADAIN-CLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQS 139
            .||.|...:     |.|::|..|: .||....|||....:|.|:..||...:.:|.....|....
 Worm   187 YHAKFAGKS-----LADLVASTISAALGHDVNSSPIIESIERIICKWLSTSMAIPQIKSSLGELR 246

  Fly   140 QGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAALIGL 204
            ...|.:..|..:..:..:    ..||::|.:...|.:.:: ||..:.||||.:...:::..:...
 Worm   247 DPIGTVFYTPCDVFISVI----RHAIEKFEKTDSGKERSK-NADYIVYCSDDSQVPLKEPCISCR 306

  Fly   205 VRMRYIEADD--DLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHL 267
            |::|.:..|:  ...|....|.:.:|.||.:|..|..:.|..|:....:.|.:.::..|.....:
 Worm   307 VKLRKVITDEKNGSGMTSANLLKQMEKDIARGFTPLVIIANYGSANIAANDEIWDLVTVSRSKKI 371

  Fly   268 WLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLM-----VHFDATALWVRDSTAVHRTF 327
            |||:||:|||    |    .||      ||.:.|....|:     ||...::|:.. |..:...:
 Worm   372 WLHLDASYAG----C----EWL------DSNSRNNVHALISEVHSVHITCSSLFPY-SGRISVVW 421

  Fly   328 NVEPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKF-EALV 391
            :.|.|.|.      ....::.:.|       :::|.::|.:||:.::..::..:.|...| |.:.
 Worm   422 SCEKLELD------GAKILYGEHP-------IRLWILIRLHGIRSIREAVKRKIILGNAFSERMS 473

  Fly   392 LADHRFELPAKRHLGLVVF-----RIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITS 451
            .....||:......|:.||     :|:...|.|.|:....:   |...:.|:||      |:|.|
 Worm   474 HHSQLFEMHHTNEHGVTVFQYKNKKIKDRTEDTNKITSMFH---NYLVLSSTLK------FSIVS 529

  Fly   452 THTTLDDIVKDWMEIRQVASTVLEEMNITISNRV-----YLKETKE------KNE 495
            .|..:  ::|..:...:...::::|...|:.|.|     .||:.|:      |||
 Worm   530 FHGKV--LIKSVVNYGRCNLSIMDESVSTLVNSVDEFEEALKKKKKIVCETPKNE 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 91/391 (23%)
hdl-2NP_501539.3 AAT_I 125..527 CDD:302748 108/451 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165883
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.700

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