DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and tdc-1

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_495743.1 Gene:tdc-1 / 174327 WormBaseID:WBGene00006562 Length:705 Species:Caenorhabditis elegans


Alignment Length:617 Identity:277/617 - (44%)
Similarity:379/617 - (61%) Gaps:41/617 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPGIT 69
            |:||.|||.||||.||||||::|||.|.:.|||::.|:|..||...|.:..:..|.|:::|||||
 Worm    81 EFRQYGKETVDYIVDYLENIQKRRVVPAIEPGYLKDLIPSEAPNTPESFESVMEDFEKLIMPGIT 145

  Fly    70 HWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLH 134
            |||.|..||||||.||.||::.|||:|||.|:||:||:.||.||||:|:::|.|||||||..||.
 Worm   146 HWQHPRFHAYFPAGNSFPSIIADMLSDAIGCVGFSWAACPAMTELELIMLDWFGKMIGLPAEFLP 210

  Fly   135 LSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKA 199
            |:...:||||:|::|||...|.|||.|...::...:|.|..::..:.::|:||||.:||||||||
 Worm   211 LTENGKGGGVIQSSASECNFVTLLAARFEVMKELRQRFPFVEEGLLLSKLIAYCSKEAHSSVEKA 275

  Fly   200 ALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAE 264
            .:||:|::|.:|.|....:||..||.||::|...||:||:|..|||||..||||.|.|||.:|.|
 Worm   276 CMIGMVKLRILETDSKFRLRGDTLRNAIQEDRNLGLIPFFVSTTLGTTSCCSFDVLSEIGPICKE 340

  Fly   265 HHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFNV 329
            :.|||||||||:||||||||||..:.|||.|.|...||:|||:::||.:.:||||...:.:...|
 Worm   341 NELWLHVDAAYSGSAFICPEFRPLMNGIEYAMSFNTNPNKWLLINFDCSTMWVRDRFKLTQALVV 405

  Fly   330 EPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLAD 394
            :||||||.....::|:.||.||||||||:||:|||:|.|||.|||::|||.||||:|.|.|:.||
 Worm   406 DPLYLQHSWMDKSIDYRHWGIPLSRRFRSLKLWFVIRMYGIDGLQKYIREHVRLAKKMETLLRAD 470

  Fly   395 HRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTHTT---- 455
            .:||:..:..:|||.||::||:|:.:.||.|||..|.:|.:|:||..::||||.:.:.:.|    
 Worm   471 AKFEIVNEVIMGLVCFRMKGDDELNQTLLTRLNASGRIHMVPASLGDRFVIRFCVCAENATDKDI 535

  Fly   456 --------------LDDIVKDWMEIRQVASTVLEEM----NITISNRVYLKETKEK-----NEAF 497
                          |.|.||..:......:..||||    |||        ||.||     |.|.
 Worm   536 EVAYEIIAQATQHVLHDSVKAVIAEEDEEAVALEEMVADLNIT--------ETPEKCLTRQNSAN 592

  Fly   498 GSSLLLSNSPLSPKVVNGSFAAIFDADEFLAKTYAGVRIAHQESPSMRRRVRGILMSG-KQFSLD 561
            .:.   |...|..::......|....:....|....||:.........:.||.:.|:. ::.|.|
 Worm   593 AAE---SGQKLERQLSKEEILAQKQHESLAKKRSFLVRMVSDPKCYNPKIVRHLNMANHRKMSQD 654

  Fly   562 SHMDVVVQTTLDAGNGATRTSTTNSYGHTTSA 593
            .:.|..:..|:.......|.|  .|.|...||
 Worm   655 LYRDRTLMQTISHSQRPNRLS--QSPGSAGSA 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 203/377 (54%)
tdc-1NP_495743.1 Pyridoxal_deC 111..489 CDD:278699 203/377 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100572
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X696
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.830

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