Sequence 1: | XP_006248769.1 | Gene: | Lztr1 / 360745 | RGDID: | 1309100 | Length: | 862 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_650326.3 | Gene: | rdx / 41704 | FlyBaseID: | FBgn0264493 | Length: | 829 | Species: | Drosophila melanogaster |
Alignment Length: | 467 | Identity: | 110/467 - (23%) |
---|---|---|---|
Similarity: | 176/467 - (37%) | Gaps: | 121/467 - (25%) |
- Green bases have known domain annotations that are detailed below.
Rat 226 CNFPVAVCRDKMFVFSGQSG--AKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQ------RRY 282
Rat 283 GHTMVAFDRHLYVFGGAADNTLPNELHCYDVDFQTWEVVQPSSDSEVGGA--------EVPERAS 339
Rat 340 SSEEASTLT----------SEERSSFKKS------------------RDVFGLDFGTTSTKQPVH 376
Rat 377 LASE----LPSGRL--FHAAAVISDAMYIFGGTVDNNIRSGEMYRFQFSCYPKCTLHEDYGRLWE 435
Rat 436 GRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKIVQAREWLAQKLEEDGALAPKEAPGSTVGR 500
Rat 501 ARPPLLRVAIREAEARPFEVLMQFLYTDKIKYPRKGHVEDVLLIMDVYKLALSFQLCRLEQLCRQ 565
Rat 566 YIEASVDLQNVLAVCECAARLQLGQLKEHCLNFIVKESHFNQVIMMKEFERL---SSPLIVEIVR 627
Rat 628 --RKQQPPPRTP 637 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lztr1 | XP_006248769.1 | KELCH repeat | 65..111 | CDD:276965 | |
Kelch_3 | 74..123 | CDD:290151 | |||
KELCH repeat | 115..169 | CDD:276965 | |||
Kelch_3 | 124..180 | CDD:290151 | |||
Kelch_1 | 171..216 | CDD:279660 | |||
Kelch_3 | 234..289 | CDD:290151 | 14/62 (23%) | ||
Kelch_1 | 280..323 | CDD:279660 | 8/42 (19%) | ||
KELCH repeat | 281..323 | CDD:276965 | 8/41 (20%) | ||
SPOP_C_like | 571..631 | CDD:269810 | 13/64 (20%) | ||
BTB | 662..761 | CDD:279045 | |||
BTB | 665..762 | CDD:197585 | |||
SPOP_C_like | 765..>800 | CDD:269810 | |||
rdx | NP_650326.3 | MATH_SPOP | 483..621 | CDD:239743 | 31/148 (21%) |
BTB | 645..749 | CDD:279045 | 33/137 (24%) | ||
BTB | 656..752 | CDD:197585 | 30/129 (23%) | ||
SPOP_C | 752..814 | CDD:269807 | 13/63 (21%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |