DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr3 and Nr1h5

DIOPT Version :10

Sequence 1:NP_001334718.1 Gene:Hr3 / 36073 FlyBaseID:FBgn0000448 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_003749414.1 Gene:Nr1h5 / 690430 RGDID:1596077 Length:504 Species:Rattus norvegicus


Alignment Length:466 Identity:104/466 - (22%)
Similarity:184/466 - (39%) Gaps:120/466 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLG 501
            |.|||||:||.||..:||||||||||||.:....|.|.....|.:|...|.:|..|||:||..:|
  Rat   121 CMVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYSCKNGGHCEMDMYMRRKCPECRLKKCKAVG 185

  Fly   502 MSRDAV--KFGRMSKKQREKVEDEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSGG 564
            |..:.:  :....||:.|:..:     ||..:.:......:.:  ||:..||:.:       ||.
  Rat   186 MLAECLLTEIQCKSKRLRKSFK-----HRPTLSSAIQVEDEGT--DTKHVSSTSR-------SGK 236

  Fly   565 YSNNEVGYGSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGDINDVLIKTL 629
            .:.:::                            :.|.|.|.                  |:.|:
  Rat   237 GAQDDM----------------------------TLTAEERR------------------LLNTI 255

  Fly   630 AEAHANTNTKLEAVHDMFRK--QPDVSRILYYKNLGQEEL----WLDCAEKLTQMIQNIIEFAKL 688
            ..||..:...:..:..:.::  .|::|    :..|.:..:    ||             ::|.|.
  Rat   256 VTAHRKSMVPVGEISALLQEYSNPELS----FLRLSEASILHANWL-------------MKFTKG 303

  Fly   689 IPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVMLP---------------QEA 738
            :|||..|:.:||..|.|....|:..:.:::|.....:.  .|..:.|               .|.
  Rat   304 LPGFENLTAEDQTALQKESKTEVMFLHVAQLYGGRDST--SGSTVRPAKPSAGTLEVHNHRGDEC 366

  Fly   739 FYTSD--------SEEMRLVSRIFQTAKS-----IAELKLTETELALYQSLVLLWPERNGVRGNT 790
            .|:|:        |..:..::|.|..:.|     :.||.:|:||.||..:..:|:.:|..::...
  Rat   367 VYSSENFFKEGYPSATLTGITREFIASLSYFYRRMRELNITDTEYALLTATTVLFSDRPYLKNKQ 431

  Fly   791 EIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHMESLSKFKLQHPNVVFP 855
            .::.|....:..:.:..:..|..   |......|:..:...|.:|..|.|.||.:|.:.|.:|. 
  Rat   432 HVENLQEPVLQLLFKYSKMYHPE---DPQHFAHLIGRLTELRTLSHSHSEILSTWKTKDPRLVM- 492

  Fly   856 ALYKELFSIDS 866
             |:.|.:.:.|
  Rat   493 -LFSEKWDLHS 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr3NP_001334718.1 NR_DBD_ROR 430..524 CDD:143526 38/88 (43%)
NR_LBD 620..862 CDD:472173 54/275 (20%)
Nr1h5XP_003749414.1 NR_DBD_FXR 118..201 CDD:143520 36/79 (46%)
NR_LBD 247..496 CDD:472173 55/290 (19%)

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