DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr3 and vdrb

DIOPT Version :10

Sequence 1:NP_001334718.1 Gene:Hr3 / 36073 FlyBaseID:FBgn0000448 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_073809191.1 Gene:vdrb / 564511 ZFINID:ZDB-GENE-080403-10 Length:431 Species:Danio rerio


Alignment Length:445 Identity:117/445 - (26%)
Similarity:207/445 - (46%) Gaps:69/445 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLG 501
            |.|||||::|.|:..:||||||||||||.....::.||.|..|.:.:.||..||.|||::||.:|
Zfish    32 CGVCGDKATGFHFNAMTCEGCKGFFRRSMKRKASFTCPFNGSCTITKDNRRHCQACRLKRCLDIG 96

  Fly   502 MSRDAVKFGRMSKKQREKVE---DEVRFHRAQMRAQSDAAPDSSVYDTQTPSSSDQLHHNNYNSG 563
            |.::.:......::::|.::   ||.....||....||  ...::.||...:     ||..|:. 
Zfish    97 MMKEFILTDEEVQRKKELIQRRKDEEAHREAQKPRLSD--EQRNIIDTLVDA-----HHKTYDD- 153

  Fly   564 GYSN-----NEVGYGSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIIDPEFISHADGD--- 620
            .||:     ..|..| |...|||   :....:.:|....||.::.|.|            ||   
Zfish   154 SYSDFSRFRPPVREG-PVTRSAS---RAASLHSLSDASSDSFSHSPES------------GDRKM 202

  Fly   621 -INDVLIKTLAEAHANTNTKLEAVHDMFRKQPDVSRILYYKNLGQEELWLDCAEKLTQMIQNIIE 684
             ::::|:....:..:::...         |:.|.|.:....:|         |:.::..||.:|.
Zfish   203 NLSNLLMMYQEQGLSSSPDS---------KEEDGSSLSMLPHL---------ADLVSYSIQKVIG 249

  Fly   685 FAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVLYGDVMLPQEAFYTSD----SE 745
            |||:||||..|:.:|||.|||:.:.|:.::|.::...|...:...|.   |:..:..:|    ..
Zfish   250 FAKMIPGFRELTAEDQIALLKSSAIEVIMLRSNQSFSLEDMSWSCGG---PEFKYCVNDVTKAGH 311

  Fly   746 EMRLVSRIFQTAKSIAELKLTETELALYQSLVLLWPERNGVRGNTEIQRLFNLSMNAIRQELETN 810
            .:.|:..:.:....:.:|.|.|.|..|..::.||.|:|.||:.:..::.|.:.....::..:..:
Zfish   312 TLELLEPLVKFQVGLKKLNLHEEEHVLLMAICLLSPDRPGVQDHVRVEALQDKVSEVLQAYIRAH 376

  Fly   811 HAPLKGDVTVLDTLLNNIPNFRDISILHME---SLSKFKLQHPNVVFPALYKELF 862
            |   .|...:...::..:.:.|.::..|.:   ||| |:.:|...:.| |..|:|
Zfish   377 H---PGGRLLYAKMIQKLADLRSLNEEHSKQYRSLS-FQPEHSMQLTP-LVLEVF 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr3NP_001334718.1 NR_DBD_ROR 430..524 CDD:143526 37/89 (42%)
NR_LBD 620..862 CDD:472173 55/252 (22%)
vdrbXP_073809191.1 None

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