DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr3 and Rorb

DIOPT Version :9

Sequence 1:NP_001334718.1 Gene:Hr3 / 36073 FlyBaseID:FBgn0000448 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_666207.3 Gene:Rorb / 225998 MGIID:1343464 Length:470 Species:Mus musculus


Alignment Length:469 Identity:187/469 - (39%)
Similarity:263/469 - (56%) Gaps:49/469 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 TAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCR 493
            |||||:||||:|||||||:||||||||||||||||||.:..:|.|||.:.|::||.||||||:||
Mouse    13 TAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCR 77

  Fly   494 LQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFHRAQMRAQ-----SDAAPDSSVYDTQTPSSSD 553
            |||||.||||||||||||||||||:.:..||:.|:.:::.|     .:|...:.||.:   |.|:
Mouse    78 LQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSS---SISN 139

  Fly   554 QLHHNNYNSGG-YSNNEV-------GYGSPYGYSASVTPQQTMQYDISADYVDSTTYEPRSTIID 610
            .|.:.|..:|| |:|..|       ||     ||.........|..:....:.....||   |.|
Mouse   140 GLSNLNTETGGTYANGHVIDLPKSEGY-----YSIDSGQPSPDQSGLDMTGIKQIKQEP---IYD 196

  Fly   611 ----PEFISHA---DGDIN--------DVLIKTLAEAHANT-NTKLEAVHDMFRKQPDVSRILYY 659
                |...:::   :|.:.        |.:.:.:.::|..| ...:|.:|.:..:......|..|
Mouse   197 LTSVPNLFTYSSFNNGQLAPGITMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAY 261

  Fly   660 KNLGQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQ 724
            ::..:|.||..||.::|..||.::||||.|.|||.|.|:|||||||:|..|:.:|||.|..:...
Mouse   262 QSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLN 326

  Fly   725 NAVLYGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLWPERNGVRGN 789
            |.||:.......:.|....|::  ||:..|..||::..|:|||.|:||:.|.||:.|:|..:...
Mouse   327 NTVLFEGKYGGMQMFKALGSDD--LVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLIEP 389

  Fly   790 TEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHMESLSKFKLQHPNVV- 853
            .::|:|......|::..::.||.    |...|..|:..||....:..||.|.|..||..||::| 
Mouse   390 RKVQKLQEKIYFALQHVIQKNHL----DDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVN 450

  Fly   854 --FPALYKELFSID 865
              ||.||||||:.|
Mouse   451 TLFPPLYKELFNPD 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr3NP_001334718.1 None
RorbNP_666207.3 NR_DBD_ROR 14..108 CDD:143526 71/93 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 104..127 4/22 (18%)
NR_LBD_ROR_like 221..461 CDD:132737 85/245 (35%)
AF-2 456..461 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 131 1.000 Domainoid score I5116
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38250
Inparanoid 1 1.050 302 1.000 Inparanoid score I2649
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG47287
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001077
OrthoInspector 1 1.000 - - otm42571
orthoMCL 1 0.900 - - OOG6_104672
Panther 1 1.100 - - O PTHR45805
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X649
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.970

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