DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr3 and Pparg

DIOPT Version :10

Sequence 1:NP_001334718.1 Gene:Hr3 / 36073 FlyBaseID:FBgn0000448 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_035276.2 Gene:Pparg / 19016 MGIID:97747 Length:505 Species:Mus musculus


Alignment Length:477 Identity:126/477 - (26%)
Similarity:205/477 - (42%) Gaps:123/477 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 SREHSSSSSGSNGAMTAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRS-QSSVVNYQCPRNK 477
            :|.|...   ||..|.     |.|:|||||:||.||||..||||||||||: :..::..:|..| 
Mouse   124 NRPHEEP---SNSLMA-----IECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN- 179

  Fly   478 QCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFHRAQMRAQSDAAPDSS 542
             |.:.:.:||:|||||.||||.:|||.:|::||||.:.::||:..|:                ||
Mouse   180 -CRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEI----------------SS 227

  Fly   543 VYDTQTPSSSD--QLHHNNYNSGGYSNNEVGYGSPYGYSASVTPQQTMQYDISADYVDSTTYEPR 605
            ..|...|.|:|  .|..:.|:|             |..|..:|..:.     .|.....||.:..
Mouse   228 DIDQLNPESADLRALAKHLYDS-------------YIKSFPLTKAKA-----RAILTGKTTDKSP 274

  Fly   606 STIIDPEFISHADGDINDVLIKTLAEAHANTNTKLEAVHDMFRKQPDVSRILYYKNLGQEELWLD 670
            ..|.|...:...:..|....|..|.|     .:|..|:                      .::..
Mouse   275 FVIYDMNSLMMGEDKIKFKHITPLQE-----QSKEVAI----------------------RIFQG 312

  Fly   671 CAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFELAIVRMSRLLDLSQNAVL------- 728
            |..:..:.:|.|.|:||.||||:.|..:||:.|||.|..|:....::.|  ::::.||       
Mouse   313 CQFRSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASL--MNKDGVLISEGQGF 375

  Fly   729 ------------YGDVMLPQEAFYTSDSEEMRLVSRIFQTAKSIAELKLTETELALYQSLVLLWP 781
                        :||.|.|:                 |:.|.....|:|.:::||::.::::|..
Mouse   376 MTREFLKSLRKPFGDFMEPK-----------------FEFAVKFNALELDDSDLAIFIAVIILSG 423

  Fly   782 ERNGVRGNTEIQRLFNLSMNAIRQELETNHAPLKGDVTVLDTLLNNIPNFRDISILHMESLSKFK 846
            :|.|:.....|:.:.:..:.|:..:|:.||..   ...:...:|..:.:.|.|...|::.|...|
Mouse   424 DRPGLLNVKPIEDIQDNLLQALELQLKLNHPE---SSQLFAKVLQKMTDLRQIVTEHVQLLHVIK 485

  Fly   847 LQ------HPNVVFPALYKELF 862
            ..      ||  :...:||:|:
Mouse   486 KTETDMSLHP--LLQEIYKDLY 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr3NP_001334718.1 NR_DBD_ROR 430..524 CDD:143526 47/94 (50%)
NR_LBD 620..862 CDD:472173 55/266 (21%)
PpargNP_035276.2 PPARgamma_N 31..108 CDD:463633
NR_DBD_Ppar 138..221 CDD:143523 45/84 (54%)
Interaction with FAM120B. /evidence=ECO:0000269|PubMed:17595322 205..280 24/108 (22%)
NR_LBD_PPAR 237..504 CDD:132730 67/335 (20%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P37231 495..503 2/9 (22%)
Blue background indicates that the domain is not in the aligned region.

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