DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr3 and nhr-64

DIOPT Version :9

Sequence 1:NP_001334718.1 Gene:Hr3 / 36073 FlyBaseID:FBgn0000448 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_001343721.1 Gene:nhr-64 / 171884 WormBaseID:WBGene00003654 Length:375 Species:Caenorhabditis elegans


Alignment Length:397 Identity:98/397 - (24%)
Similarity:149/397 - (37%) Gaps:133/397 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 SATATSARENSREHSSSSSGSNGAMTAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSV 468
            |.|.....|...|.|:|:|.|  ..::..|.:.|.:|||:::|.|||.::|:||||||||:....
 Worm     2 SETEEMTLEEKEEVSTSTSQS--PQSSSFENVFCAICGDRATGKHYGAMSCDGCKGFFRRTIRKR 64

  Fly   469 VNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRFHRAQMRA 533
            .:|.|...::|.||:..||.|:.||...||:.||.||||:..|          |.:|        
 Worm    65 HSYVCRFGEKCQVDKAKRNSCRKCRFDVCLRKGMRRDAVQTER----------DRIR-------- 111

  Fly   534 QSDAAPDSSVYDTQTPSSSDQLHHNNYNSGGYSNNEVGYGSPYGYSASVTPQQTMQYDISADYVD 598
              .|.|.|                 |.::||                 :.|              
 Worm   112 --PANPLS-----------------NGSNGG-----------------IVP-------------- 126

  Fly   599 STTYEPRSTIIDPEFISHADGDINDVLIKTLAEAHANTN-------TK-LEAVHDMFRKQPDVSR 655
                                   :|.|:.||..|.|:|.       || .||     |||...: 
 Worm   127 -----------------------DDPLLDTLIRAEASTRGLRTTVITKTAEA-----RKQATTN- 162

  Fly   656 ILYYKNLGQEELWLDCAEKLTQMIQNIIEFAKLIPGFMRLSQDDQILLLKTGSFE-LAIVRMSRL 719
                          |..:.:.|.:..::|:||::.||.|:....|:.||:..|.: |.:....|.
 Worm   163 --------------DVTDSMNQQLTLMVEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRS 213

  Fly   720 LDLSQNAVLYGDVMLPQEAFYTSDSEEM----RLVSRIF-QTAKSIAELKLTETELALYQSLVLL 779
            :.||.      .|.|..|.....||.::    |:..||. |....:..|.:.|.|....:::...
 Worm   214 IHLSD------AVWLTNETCLHKDSPKIPDMNRVAERIIDQVTNPMRSLHMNEIEYIALKAIAFF 272

  Fly   780 WPERNGV 786
            .|...|:
 Worm   273 DPLAKGI 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr3NP_001334718.1 None
nhr-64NP_001343721.1 NR_DBD_HNF4A 33..108 CDD:143518 36/84 (43%)
NR_LBD 132..354 CDD:325017 42/174 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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