DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and Kcnc4

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_006502538.1 Gene:Kcnc4 / 99738 MGIID:96670 Length:666 Species:Mus musculus


Alignment Length:454 Identity:112/454 - (24%)
Similarity:182/454 - (40%) Gaps:125/454 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 RRLQSRLYNFLERP---RGLHAIFYHVMVFLMVFT---CL----ALSVFSTIKEYEE--DAVYIL 107
            |..|.|::...|.|   |....:.:..:.|::|..   ||    |.::...:.|...  :...:.
Mouse   210 RGWQPRMWALFEDPYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEIHRVGNITSVR 274

  Fly   108 FRMEI-----------LVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTILASI 161
            ||.|:           :.|:|||:||..|:   .|      |...|.|||....|||.|.||...
Mouse   275 FRREVETEPILTYIEGVCVMWFTLEFLVRI---VC------CPDTLDFVKNLLNIIDFVAILPFY 330

  Fly   162 VVLGM-GTSGQVF--ATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGFLG 223
            :.:|: |.|.:..  ....||.:||.:|||:.::.|.....::||..:.|...|.:..:....||
Mouse   331 LEVGLSGLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALG 395

  Fly   224 LIFASFLVYMWEK-----------DVNDKFSNFAQALWWGVITLCTVGYGDMVPITWQGKLIASC 277
            ::..:.::|..|:           |..| |.|.....||.|:|:.|:|||||.|.||.|.|:.:.
Mouse   396 VLIFATMIYYAERIGARPSDPRGNDHTD-FKNIPIGFWWAVVTMTTLGYGDMYPKTWSGMLVGAL 459

  Fly   278 CALLGISFFALPAGIL----GSGFALKVQQQ----QRQKHMIRRRQPAATLIQAVWRCYAADEHS 334
            |||.|:...|:|..::    |..::|.:.:|    :|:||:.|..|     :::...| .::|.|
Mouse   460 CALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKKHVPRPPQ-----LESPIYC-KSEETS 518

  Fly   335 VSVATWNIHRVALPSPPA------SRASSSFKHN---------------TSFVARLPT------I 372
            ...:|::.     .||||      .|..:..|.|               |..:|..||      :
Mouse   519 PRDSTYSD-----TSPPAREEGVVERKRADSKQNGDANAVLSDEEGAGLTQPLALAPTPEERRAL 578

  Fly   373 RR--------------------------------HKSQTIQTPGGGDGGGVSKPPGSSRASTRY 404
            ||                                .||:::....|..|..:...|.:||.|:.|
Mouse   579 RRSGTRDRNKKAAACFLLSAGDYACADGSVRKGCEKSRSLNNIAGAAGTSLGLSPLASRYSSPY 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 69/239 (29%)
Ion_trans_2 221..295 CDD:285168 29/88 (33%)
KCNQ_channel <619..719 CDD:281513
Kcnc4XP_006502538.1 Potassium_chann 1..29 CDD:314363
BTB_KCNC2_4 35..162 CDD:349722
Ion_trans 229..487 CDD:366146 74/267 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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