DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNQ and kcnq3

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_003197981.2 Gene:kcnq3 / 799747 ZFINID:ZDB-GENE-070912-301 Length:795 Species:Danio rerio


Alignment Length:886 Identity:284/886 - (32%)
Similarity:383/886 - (43%) Gaps:273/886 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 MSLLGK-PLNYNRGTRR-DVRYRRLQSRLYNFLERPRGLHAIFYHVMVFLMVFTCLALSVFSTIK 97
            :.||.| ||.|.|..:| ::|.||:|:.:|:.|||||| .|:.||..|||:|..||.||:.:|.|
Zfish    56 IGLLAKTPLGYTRPVKRNNIRKRRIQNLIYDALERPRG-WALLYHAFVFLIVLGCLILSILTTFK 119

  Fly    98 EYEEDAVYILFRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTILASIV 162
            |:|:|:.:.|..:|...:..|..||..|:|::||..||:|..|||||.::|.|::||..::||:.
Zfish   120 EHEKDSAHWLVILETFTIFIFGGEFALRIWAAGCCCRYKGWRGRLKFARKPLCVLDIFVLIASVP 184

  Fly   163 VLGMGTSGQVFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGFLGLIFA 227
            |:.:...|.|.||| ||.|||.|||||:||||||||||||||.:|.|.:||||..|||||.||.|
Zfish   185 VVAVRNQGNVLATS-LRSLRFLQILRMLRMDRRGGTWKLLGSAIYTHSKELITAWYIGFLSLILA 248

  Fly   228 SFLVYMWEKD-----------------VNDKFSNFAQALWWGVITLCTVGYGDMVPITWQGKLIA 275
            |||||:.|||                 ....|..:|.|||||:|||.|:||||..|.||.|:|:|
Zfish   249 SFLVYLVEKDDETTELHRDTDGPSPTPAPQDFDTYADALWWGLITLTTIGYGDKTPKTWAGRLLA 313

  Fly   276 SCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQAVWRCYAADE-HSVSVAT 339
            ...||:|:|||||||||||||.|||||:|.||||..:||.|||:||||.||.|:.:. ....:||
Zfish   314 GTFALIGVSFFALPAGILGSGLALKVQEQHRQKHFEKRRHPAASLIQAAWRYYSTNPVREDLIAT 378

  Fly   340 WNIHRVALPSPPASRASSSFKHNTSFVARLPTIRRHKSQTIQTPGGGDGGGVSKPPGSSRASTRY 404
            |..:..                    |..||..|:                              
Zfish   379 WRFYET--------------------VISLPCFRK------------------------------ 393

  Fly   405 TRTIRDINASVENLEVVQNGKSMNPSFSEDSVAETTCLKNIKNSDASQPATLANCKLSSSAGSLA 469
                       :.|||:.:.|             .:.|..::.| ..:|:|:             
Zfish   394 -----------DPLEVMASQK-------------LSLLDRVRLS-TPRPSTV------------- 420

  Fly   470 QFPDRNRDRDQDRRGHGEGEGDQAEEQAKAGGSRRNLTIPVVLYGFLHGNFLGSTLSLRNPRVAP 534
                                             |..:.:|..                 ||...|
Zfish   421 ---------------------------------RARVMMPAA-----------------NPESVP 435

  Fly   535 ANDRDLEAGRDEDEVHKDTCQRSNTLPLPVKPDSPSGSPGSGRTGRFFAAASHFLET------GF 593
            .|....||..:.                |.|...|:|.....|....|...::.|..      |.
Zfish   436 GNCGPAEAIEES----------------PSKEGKPAGFSNRERFRTAFRMKAYALRQSSEDTGGL 484

  Fly   594 SSPNP-----IIDVANEEDEPRCTQLTNRHKTAIRFIRKLKYFVARRKFKEALKPYDVKDVMEQY 653
            ..|.|     ..|:..||..|..       |..||.:|.:.:.:.:::|||.|:|||||||:|||
Zfish   485 PDPTPEEKGFPPDILLEEMIPTL-------KLVIRALRIIMFLLNKKRFKETLRPYDVKDVIEQY 542

  Fly   654 AAGHVDLLGRVKMLHLRLDQIL--------------------GKQGSKAKDVYASKISL------ 692
            :|||:|:|.|:|.|..|||.||                    ..|.|..::.|.:|.||      
Zfish   543 SAGHLDMLTRIKYLQTRLDLILTPGPTLTPKHKKPQKTPFPYPSQQSPRQESYLAKTSLPDPEDQ 607

  Fly   693 --ASRVVKVERQVADIEEKLDILIKAY------------MEDRDRFLAL-------------PL- 729
              ..|.|:|||||.|:|:|||.|:..:            ||..|..|.:             || 
Zfish   608 SMMGRFVRVERQVEDMEKKLDFLVDMHMQHDFTGPGHMTMERCDPTLTVSVAGDRVYCSYGPPLH 672

  Fly   730 -------PAKPKIHSIS--PSHKPLHHAHNLAMIDVWKRTAALSVHPEQVTTTPLLNPSAPDSSE 785
                   |.:|.:..||  |||.|..:........|....:.|||..|::..:|.....:.:..|
Zfish   673 NTPYYTHPPRPTVLPISPLPSHSPSSNVSQTGGHRVGTPLSLLSVTHEELERSPSGFSISAEKEE 737

  Fly   786 L----------------RSLTATQTPTTTTDAIATQTPMPP 810
            :                |...|.....|.||......|:.|
Zfish   738 VTGKASGLTAGSSWGRDRRYLAEGETDTDTDPFTPSGPVAP 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 119/221 (54%)
Ion_trans_2 221..295 CDD:285168 47/90 (52%)
KCNQ_channel <619..719 CDD:281513 50/139 (36%)
kcnq3XP_003197981.2 Ion_trans 94..343 CDD:306908 133/249 (53%)
KCNQ_channel 439..637 CDD:308886 66/220 (30%)
KCNQC3-Ank-G_bd 703..791 CDD:314780 14/76 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 307 1.000 Domainoid score I1323
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168835at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24976
orthoMCL 1 0.900 - - OOG6_102886
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.780

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