DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcnq1.2

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_017209602.2 Gene:kcnq1.2 / 796289 ZFINID:ZDB-GENE-130530-935 Length:597 Species:Danio rerio


Alignment Length:689 Identity:258/689 - (37%)
Similarity:354/689 - (51%) Gaps:192/689 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GKCRPGRPNSERILQPRMSLLGKPLNYNRGTRRDV----RYRR--------LQSRLYNFLERPRG 70
            |...|..|.......|..|...:|::.:.|....:    |:..        :|..:|||||||.|
Zfish    65 GSSAPVAPGGHTKEPPAHSQRRQPVSIHSGPGETLAAAARFTHSPYHAKTSMQGDVYNFLERPAG 129

  Fly    71 LHAIFYHVMVFLMVFTCLALSVFSTIKEYEEDAVYILFRMEILVVIWFTMEFGARLWSSGCRSRY 135
            |....||.:|||||..||..||.|||::|.:.|...||.|||::|::|..|:..||||:||||:|
Zfish   130 LRCFLYHFLVFLMVLVCLIFSVLSTIEQYADFATGSLFWMEIVLVVFFGTEYVVRLWSAGCRSKY 194

  Fly   136 QGCLGRLKFVKRPFCIIDIVTILASIVVLGMGTSGQVFATSALRGLRFFQILRMVRMDRRGGTWK 200
            .|..|||:|:::|..|||::.::||:|||.:|::||||||||:||:||.|||||:.:||:||||:
Zfish   195 VGIKGRLRFIRKPISIIDLIVVVASVVVLSVGSNGQVFATSAIRGIRFLQILRMLHVDRQGGTWR 259

  Fly   201 LLGSVVYAHRQELITTMYIGFLGLIFASFLVYMWEKDVNDK-----FSNFAQALWWGVITLCTVG 260
            ||||||:.||||||||:|||||||||:|:.||:.|||..|:     ||::|.||||||:|:.|:|
Zfish   260 LLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDAVDEEGKTGFSSYADALWWGVVTVTTIG 324

  Fly   261 YGDMVPITWQGKLIASCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQAVW 325
            |||.||.||.||.||||.::..|||||||||||||||||||||:|||||..|:...||:|||.:|
Zfish   325 YGDKVPQTWIGKAIASCFSVFAISFFALPAGILGSGFALKVQQKQRQKHFNRQIPAAASLIQTLW 389

  Fly   326 RCYAADEHSVSVATWNIHRVALPSPPASRASSSFKHNTSFVARLPTIRRHKSQTIQTPGGGDGGG 390
            ||||.::.....|||.::.:          :..:         :|.|....|.            
Zfish   390 RCYACEKSDSCTATWKMYVL----------TGDY---------IPIINSENSS------------ 423

  Fly   391 VSKPPGS-SRASTRYTR---TIRDINASVENLEVVQNGKSMNPSFSEDSVAETTCLKNIKNSDAS 451
                ||: .|.|.||.|   ::||            || |:.|:                     
Zfish   424 ----PGNFRRLSKRYKRKPKSLRD------------NG-SLGPA--------------------- 450

  Fly   452 QPATLANCKLSSSAGSLAQFPDRNRDRDQDRRGHGEGEGDQAEEQAKAGGSRRNLTIPVVLYGFL 516
                                                ||              |.|:||.:.|..:
Zfish   451 ------------------------------------GE--------------RALSIPQITYDHI 465

  Fly   517 HGNFLGSTLSLRNPRVAPANDRDLEAGRDEDEVHK----DTCQRS---NTLPLPVKP-----DSP 569
                               .|:|.....|...:.|    ...|||   .||..|..|     |.|
Zfish   466 -------------------EDKDAVFTDDSTGIAKLFRSSDRQRSWSAFTLSCPSSPVKKKLDGP 511

  Fly   570 SGSPGSGRTGRFFAAASHFLETGFSS---PNPIIDVANEEDEPRCTQLTNRHKTAIRFIRKLKYF 631
            ..|..:....          |..|::   |.|::..|        :||::.|::||:.||:::||
Zfish   512 DISRNNSLVD----------ELDFTTEDIPLPVVTDA--------SQLSHAHRSAIKVIRRMQYF 558

  Fly   632 VARRKFKEALKPYDVKDVMEQYAAGHVDLLGRVKMLHLR 670
            ||||||::|.|||||:||:|||:.||::::.|:|.|..|
Zfish   559 VARRKFQQARKPYDVRDVIEQYSQGHLNMMVRIKELQRR 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 132/209 (63%)
Ion_trans_2 221..295 CDD:285168 49/78 (63%)
KCNQ_channel <619..719 CDD:281513 29/52 (56%)
kcnq1.2XP_017209602.2 Ion_trans 133..369 CDD:306908 147/235 (63%)
KCNQ_channel 487..>597 CDD:308886 46/127 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168835at2759
OrthoFinder 1 1.000 - - FOG0003178
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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