DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcna1a

DIOPT Version :10

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_005163101.1 Gene:kcna1a / 795942 ZFINID:ZDB-GENE-110408-15 Length:492 Species:Danio rerio


Alignment Length:504 Identity:116/504 - (23%)
Similarity:184/504 - (36%) Gaps:163/504 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DPDNDIYAFYDIRGYKGKCRPGRPNSERILQPRMS--LLGKPLN------------YNRGTRRDV 52
            ||..:.| |:|         ..||:.:.||....|  .|.:|.|            |..|.....
Zfish    71 DPLRNEY-FFD---------RNRPSFDAILYYYQSGGRLRRPANVPLDMFSEEIKFYELGVEAME 125

  Fly    53 RYR----------------RLQSRLYNFLERP------RGLHAIFYHVMVFLMVFTCLALSVFST 95
            ::|                ..|.:::...|.|      ||:..:  .|||.|:......|.....
Zfish   126 KFREDEGFIREEERPLPEKEFQRQIWLLFEHPESSGPARGIAIV--SVMVILISIVIFCLETLPE 188

  Fly    96 IKEYEEDAVYIL----------------FRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKF 144
            :||..|..:.|:                |.:|.|.:|||:.|...|.::         |..:..|
Zfish   189 LKEDPEGRIKIIGNTTYYYKPSILADPFFIIETLCIIWFSFELIVRFFA---------CPSKAAF 244

  Fly   145 VKRPFCIIDIVTILASIVVLGM----------GTSGQVFATSALRGLRFFQILRMVRMDRRGGTW 199
            .|.....||||.|:...:.||.          |...|..:.:.||.:|..::.|:.::.|.....
Zfish   245 FKNMMNTIDIVAIIPYFITLGTELAEEQDGKEGKGEQATSLAILRVIRLVRVFRIFKLSRHSKGL 309

  Fly   200 KLLGSVVYAHRQELITTMYIGFLGLIFASFLVYMWEKDVNDK-FSNFAQALWWGVITLCTVGYGD 263
            ::||..:.|..:||...::..|:|:|..|..||..|.:..:. ||:...|.||.|:::.||||||
Zfish   310 QILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEKESYFSSIPDAFWWAVVSMTTVGYGD 374

  Fly   264 MVPITWQGKLIASCCALLGISFFALPAGILGSGFAL---KVQQQQRQKHMIRRRQPAATLIQAVW 325
            |||:|..||::.|.||:.|:...|||..::.|.|..   :..:.:.|..::....|.        
Zfish   375 MVPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLNVSNPN-------- 431

  Fly   326 RCYAADEHSVSVATWNIHRVALPSPPASRASSSFKHNTSFVARLPTIRRHKSQTIQTPGGGDGGG 390
              .|:|.:|                  ||.|||            |:  .||:.::..|      
Zfish   432 --IASDSNS------------------SRRSSS------------TV--SKSEYMEIDG------ 456

  Fly   391 VSKPPGSSRASTRYTRTIRDINASVENLE---------VVQNGKSMNPS 430
                               |||.|::|..         .:.|...:|.|
Zfish   457 -------------------DINNSIDNFREANLRTGNCTIPNQNCVNKS 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 72..305 CDD:459842 73/262 (28%)
KCNQ_channel <619..719 CDD:460954
kcna1aXP_005163101.1 BTB_POZ 34..160 CDD:453885 19/98 (19%)
Ion_trans 163..415 CDD:459842 75/262 (29%)
Blue background indicates that the domain is not in the aligned region.

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