DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcnv2a

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_695650.4 Gene:kcnv2a / 567267 ZFINID:ZDB-GENE-091117-27 Length:518 Species:Danio rerio


Alignment Length:362 Identity:84/362 - (23%)
Similarity:141/362 - (38%) Gaps:82/362 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DPD--NDIYAFY--DIRGYKGKCRPGR------------PNSERI----LQPRMSLLGKPLNYNR 46
            |||  ::|:.||  .:...|.:..|..            .|:.|.    .:.|...|.:.|...|
Zfish   139 DPDVFHNIFNFYRTGVLWIKDELCPRNFLEEINYWGVRIKNTHRCCRISFEERQDELNEQLKVQR 203

  Fly    47 GTR------------RDVRYRRLQSRLYNFLERPRGLHAIFYHVMVFLMVFTCLALSVFSTIKEY 99
            ...            :|:.:...:..::|.:|:|  ..:|...:|.....|..|...|..|:...
Zfish   204 ELEAEVETEEHEDLFQDMAFGHTRFLIWNMMEKP--FSSIIAKIMAVASSFFVLVSLVAMTLNTV 266

  Fly   100 EEDAVYILFR-----------MEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIID 153
            || ..||...           :|...:.:||||:..||.|:...:|         |.:.....:|
Zfish   267 EE-MQYITTNGQLSGKTYCEYVETFCIAFFTMEYLLRLVSTPDLTR---------FGRSVLNAVD 321

  Fly   154 IVTIL--------------------ASIVVLG-MGTSGQVFATSALRGLRFFQILRMVRMDRRGG 197
            ::.||                    :.|..:| :|..|||     ||.:|..:|.|::::.|...
Zfish   322 LIAILPLYLQMVLESFESHDYWKHGSDIETVGRVGKLGQV-----LRIMRLMRIFRILKLARHST 381

  Fly   198 TWKLLGSVVYAHRQELITTMYIGFLGLIFASFLVYMWEKDVN-DKFSNFAQALWWGVITLCTVGY 261
            ..:..|..:....|::........:|::..|.:||..|.||: ..|::...|.||..:::.||||
Zfish   382 GLRAFGFTLRQCYQQVGCLFLFIAMGILTFSAMVYTVEHDVHKTNFTSIPHAWWWAAVSISTVGY 446

  Fly   262 GDMVPITWQGKLIASCCALLGISFFALPAGILGSGFA 298
            |||.|.|..|::.|..|...||....:|..||.:.|:
Zfish   447 GDMFPETHLGRIFAFACISFGIILNGMPISILFNKFS 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 60/232 (26%)
Ion_trans_2 221..295 CDD:285168 28/74 (38%)
KCNQ_channel <619..719 CDD:281513
kcnv2aXP_695650.4 BTB 84..175 CDD:295341 8/35 (23%)
BTB 86..175 CDD:197585 8/35 (23%)
Ion_trans 285..490 CDD:278921 56/213 (26%)
Ion_trans_2 403..484 CDD:285168 29/81 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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