DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcng4b

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_009301775.1 Gene:kcng4b / 566228 ZFINID:ZDB-GENE-130530-634 Length:535 Species:Danio rerio


Alignment Length:344 Identity:92/344 - (26%)
Similarity:157/344 - (45%) Gaps:62/344 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LGKPLNYNRGTRRDVRYRRLQSRLYNFLERPRG-----LHAIFYHVMVFLMVFT-CLALSVFSTI 96
            |.:||..::|      :.||.:||...:|.|..     |.|.|..||:.:.|.: |:     ||:
Zfish   190 LQRPLAQDKG------FIRLMNRLQEIVENPHSGWAGKLFACFSVVMIAVTVISLCI-----STL 243

  Fly    97 KEYEE-----DAVYILFRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVT 156
            .::|.     :....:|.:|.:.|.||:|||         ..|:.....:::|::.|..:||::.
Zfish   244 PDHENRGECTEKCRNIFIVETVCVAWFSMEF---------LLRFLQAESKMQFLRNPLNVIDVIA 299

  Fly   157 IL---ASIVVLGMGTSGQVFATSA-------------LRGLRFFQILRMVRMDRRGGTWKLLGSV 205
            ||   .|:||....||.:.....|             ||.:|..:||.::|:.|.....:.||..
Zfish   300 ILPYYISLVVDSEDTSDEAELNGAGTSRGYLDKLGLILRVMRALRILYVMRLARHSLGLQTLGLT 364

  Fly   206 VYAHRQELITTMYIGFLGLIFASF--LVYMWEKDVN-------DKFSNFAQALWWGVITLCTVGY 261
            :....:|.  .:.:.||.:..|.|  ||::.||:.:       :.||:...:.||.:|::.||||
Zfish   365 MQRSMREF--GLLLLFLCVAVALFSPLVHLAEKEFSKGKATGPNSFSSIPASYWWAIISMTTVGY 427

  Fly   262 GDMVPITWQGKLIASCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPA----ATLIQ 322
            |||||.:..|:::|....|.||...|.||..:...|:....:.:|::.||.:.:..    ||..:
Zfish   428 GDMVPYSIPGQVVAFSSILSGILIMAFPATSIFHVFSRSYHELKREQEMIYKEERVAILDATAKE 492

  Fly   323 AVWRCYAADEHSVSVATWN 341
            ...|....|..|.::|..|
Zfish   493 DAQRLLKRDSFSWAIANRN 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 63/234 (27%)
Ion_trans_2 221..295 CDD:285168 30/82 (37%)
KCNQ_channel <619..719 CDD:281513
kcng4bXP_009301775.1 BTB_2 64..161 CDD:280393
BTB <102..163 CDD:197585
Ion_trans 259..471 CDD:278921 62/222 (28%)
Ion_trans_2 <414..465 CDD:285168 21/50 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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