DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNQ and Kcna10

DIOPT Version :10

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_001178642.1 Gene:Kcna10 / 295360 RGDID:1304667 Length:511 Species:Rattus norvegicus


Alignment Length:259 Identity:70/259 - (27%)
Similarity:115/259 - (44%) Gaps:44/259 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 RGLHAIFYHVMVFLMVFTCLALSVFSTIKEYEEDAVYIL----------------------FRME 111
            ||:..:...|:|..:...||     .|:.|:.||....:                      |.:|
  Rat   216 RGVAVVSVLVVVISITIFCL-----ETLPEFREDRELKVVRDPTINTNKTGLSQTMFTDPFFMVE 275

  Fly   112 ILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIV-------TILASIVVLGMGTS 169
            ...::|||.|...         |:..|..:..|.|....||||:       |::..:|.....::
  Rat   276 STCIVWFTFELVL---------RFVVCPSKPDFFKNIMNIIDIISIIPYFATLITELVQETEPSA 331

  Fly   170 GQVFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGFLGLIFASFLVYMW 234
            .|..:.:.||.:|..::.|:.::.|.....::||..:.|..:||...::..|:|:|..|..||..
  Rat   332 QQNMSLAILRIIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFA 396

  Fly   235 EKDVNDK-FSNFAQALWWGVITLCTVGYGDMVPITWQGKLIASCCALLGISFFALPAGILGSGF 297
            |.|..:. ||:.....||.|:|:.|||||||.|.|..||::.:.||:.|:...|||..::.|.|
  Rat   397 EVDEPESHFSSIPDGFWWAVVTMTTVGYGDMCPTTPGGKIVGTLCAIAGVLTIALPVPVIVSNF 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 72..305 CDD:459842 68/256 (27%)
KCNQ_channel <619..719 CDD:460954
Kcna10NP_001178642.1 BTB_POZ 86..212 CDD:453885
Ion_trans 262..467 CDD:459842 60/208 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.