DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and Kcng2

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_001177302.1 Gene:Kcng2 / 240444 MGIID:3694646 Length:480 Species:Mus musculus


Alignment Length:278 Identity:84/278 - (30%)
Similarity:130/278 - (46%) Gaps:36/278 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RYRRLQSRLYNFLERPR-GLHA-IFYHVMVFLMVFTC--LALSVFSTIKEYEE-----DAVYILF 108
            |..|.:.||.:.:|.|. ||.. :|.:|.|..:..|.  |.||....::..||     .....||
Mouse   168 RLERGRQRLRDVVENPHSGLAGRLFAYVSVAFVAVTAVGLCLSTMPDVRAEEERGECSTKCRNLF 232

  Fly   109 RMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTIL----ASIVVLGMGTS 169
            .:|.:.|.||:.||..|...:.         .:..|::.|..||||:.||    :.:..|..|.:
Mouse   233 VLETVCVAWFSFEFLLRSLQAE---------SKCAFLRTPLAIIDILAILPFYVSLLAGLAAGPT 288

  Fly   170 GQVFATSA---LRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGFLGLIFASF-- 229
            |......|   ||.||..::|.::|:.|.....:.||..|....:|.  .:.:.||.:..|.|  
Mouse   289 GSKMLERAGLVLRLLRALRVLYVMRLARHSLGLRSLGLTVRRCAREF--GLLLLFLCVAMALFAP 351

  Fly   230 LVYMWEKDV--NDKFSNFAQALWWGVITLCTVGYGDMVPITWQGKLIASCCALLGISFFALPAGI 292
            ||::.|:::  :..||:...:.||.||::.|||||||||.:..|:::|....|.||...|.|...
Mouse   352 LVHLAERELGAHRDFSSVPASYWWAVISMTTVGYGDMVPRSLPGQVVALSSILSGILLMAFPVTS 416

  Fly   293 LGSGFA-----LKVQQQQ 305
            :...|:     ||.|||:
Mouse   417 IFHTFSRSYSELKEQQQR 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 68/225 (30%)
Ion_trans_2 221..295 CDD:285168 29/77 (38%)
KCNQ_channel <619..719 CDD:281513
Kcng2NP_001177302.1 BTB_POZ 33..127 CDD:365784
Ion_trans 190..429 CDD:395416 71/249 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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