DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNQ and Kcns2

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_001258633.1 Gene:Kcns2 / 16539 MGIID:1197011 Length:477 Species:Mus musculus


Alignment Length:336 Identity:86/336 - (25%)
Similarity:145/336 - (43%) Gaps:75/336 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 GKPLNYNRGTRRDVRYRRLQSRLYNFLERPRGLHAIFYHVMVFLMVFTCLALSVFSTIKEYE--- 100
            |:||    |..|...:..|.:..|:.|.|       .:.|:..|:|...:.....:::.:::   
Mouse   163 GQPL----GNFRRQLWLALDNPGYSVLSR-------VFSVLSILVVLGSIITMCLNSLPDFQIPD 216

  Fly   101 ------EDAVYILFRMEILV---VIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDI-- 154
                  ||.     |.||:.   :.|||.|..|         |:......|||.|....:||:  
Mouse   217 SQGNPGEDP-----RFEIVEHFGIAWFTFELVA---------RFAVAPDFLKFFKNALNLIDLMS 267

  Fly   155 -----VTILASIVV------LGMGTSGQVFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYA 208
                 :|::.::||      ..:|...||     ||.:|.|:||::.|  ...|...|..::.|:
Mouse   268 IVPFYITLVVNLVVESSPTLANLGRVAQV-----LRLMRIFRILKLAR--HSTGLRSLGATLKYS 325

  Fly   209 HRQELITTMYIGFLGLIFASFLVYMWEKDVNDKFSNFAQALWWGVITLCTVGYGDMVPITWQGKL 273
            :::..:..:|:. :|:...|.:.|..||:.|:..:......||..:::.||||||:||.|..|||
Mouse   326 YKEVGLLLLYLS-VGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVGYGDVVPGTTAGKL 389

  Fly   274 IASCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQAVWRCYAAD----EHS 334
            .||.|.|.||....||..::.:.|:          |..||::   .|..|:..|...|    ..|
Mouse   390 TASACILAGILVVVLPITLIFNKFS----------HFYRRQK---QLESAMRSCDFGDGMKEVPS 441

  Fly   335 VSVATWNIHRV 345
            |::..:..|:|
Mouse   442 VNLRDYYAHKV 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 63/229 (28%)
Ion_trans_2 221..295 CDD:285168 28/73 (38%)
KCNQ_channel <619..719 CDD:281513
Kcns2NP_001258633.1 BTB_2 19..118 CDD:308049
Ion_trans 186..421 CDD:306908 70/273 (26%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 374..379 4/4 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.