DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KCNQ and Kcnc3

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_036008594.1 Gene:Kcnc3 / 16504 MGIID:96669 Length:807 Species:Mus musculus


Alignment Length:575 Identity:132/575 - (22%)
Similarity:216/575 - (37%) Gaps:147/575 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 YRRLQSRLYNFLERPRGLHAIFYHVMVFLMVFTCLALSVFSTIKEYEEDAVYI------------ 106
            :||.|.|::...|.|....|..|  :.|..:|..| :|:.:...|..|..::|            
Mouse   270 WRRWQPRVWALFEDPYSSRAARY--VAFASLFFIL-ISITTFCLETHEGFIHISNKTVTQASPIP 331

  Fly   107 -----------------LFRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDI 154
                             |..:|.:.|:|||.||         ..|...|..:::|:|....|||.
Mouse   332 GAPPENITNVEVETEPFLTYVEGVCVVWFTFEF---------LMRVTFCPDKVEFLKSSLNIIDC 387

  Fly   155 VTILASIVVLGM-GTSGQVF--ATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITT 216
            |.||...:.:|: |.|.:..  ....||.:||.:|||:.::.|.....::||..:.|...|.:..
Mouse   388 VAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLL 452

  Fly   217 MYIGFLGLIFASFLVYMWEK---DVND-------KFSNFAQALWWGVITLCTVGYGDMVPITWQG 271
            :....||::..:.::|..|:   |.:|       .|.|.....||.|:|:.|:|||||.|.||.|
Mouse   453 IIFLALGVLIFATMIYYAERIGADPDDILGSNHTYFKNIPIGFWWAVVTMTTLGYGDMYPKTWSG 517

  Fly   272 KLIASCCALLGISFFALPAGIL----GSGFALKVQQQ----QRQKHMIRRRQPAATLIQAVWRCY 328
            .|:.:.|||.|:...|:|..::    |..::|.:.:|    ::.||:.|..||.:.         
Mouse   518 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIPRPPQPGSP--------- 573

  Fly   329 AADEHSVSVATWNIHRVALPSPPASRASSSFKHNTSFVARLPTIRRHKSQTIQTPG--------- 384
                        |..:...|.||....    .|.:..::..|.| ...|..:...|         
Mouse   574 ------------NYCKPDPPPPPPPHP----HHGSGGISPPPPI-TPPSMGVNVAGAYPPGPHTH 621

  Fly   385 -----GGDGG----GVSKPPGSSRASTRYTRTIRDINASVENLEVVQNGKSMNPSFSEDSVAETT 440
                 ||.||    |:...|............:.:.|.:..:|.|::.|  ::|..:.|..|...
Mouse   622 PGLLRGGAGGLGIMGLPPLPAPGEPCPLAQEEVIETNRAGSDLGVLEEG--VDPRPNGDPAAAAL 684

  Fly   441 CLKNIKNSDASQPATLANCKLSSSAGSLAQFPDRNRDRD----QDRRGHGEGEGDQAEEQAKA-- 499
            ..::....|  |||.....|...:.||..::   :|||.    .|.....:|...:|..:|.|  
Mouse   685 AHEDCPAID--QPAMSPEDKSPITPGSRGRY---SRDRACFLVTDYAPSPDGSIRKATPEAPAIF 744

  Fly   500 --GG------------------SRRNLTIPVVLYGFLHGNFLGSTLSLRNPRVAP 534
              .|                  :.|..::|..|        |....:.|:|||.|
Mouse   745 DVSGCPHFTAPITPRKTPERRKTSRRFSVPPTL--------LSPPETSRDPRVPP 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 67/254 (26%)
Ion_trans_2 221..295 CDD:285168 29/87 (33%)
KCNQ_channel <619..719 CDD:281513
Kcnc3XP_036008594.1 BTB_KCNC1_3 91..204 CDD:349721
Ion_trans 290..551 CDD:395416 72/272 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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