DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and Kcna6

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_038596.1 Gene:Kcna6 / 16494 MGIID:96663 Length:529 Species:Mus musculus


Alignment Length:235 Identity:72/235 - (30%)
Similarity:110/235 - (46%) Gaps:31/235 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 FRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTILASIVVLG------- 165
            |.:|.|.::|||.|.         ..|:..|..:..|.:....|||:|.|....:.||       
Mouse   264 FLVETLCIVWFTFEL---------LVRFSACPSKAAFFRNIMNIIDLVAIFPYFITLGTELVQRH 319

  Fly   166 -----MGTSG----QVFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGF 221
                 .|.||    |..:.:.||.:|..::.|:.::.|.....::||..:.|..:||...::..|
Mouse   320 EQQSVSGGSGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELGLLIFFLF 384

  Fly   222 LGLIFASFLVYMWE-KDVNDKFSNFAQALWWGVITLCTVGYGDMVPITWQGKLIASCCALLGISF 285
            :|:|..|..||..| .||:..|.:...|.||.|:|:.|||||||.|:|..||::.|.||:.|:..
Mouse   385 IGVILFSSAVYFAEADDVDSLFPSIPDAFWWAVVTMTTVGYGDMYPMTVGGKIVGSLCAIAGVLT 449

  Fly   286 FALPAGILGSGFAL-----KVQQQQRQKHMIRRRQPAATL 320
            .|||..::.|.|..     ..|::|.|...:...||...|
Mouse   450 IALPVPVIVSNFNYFYHRETEQEEQGQYTHVTCGQPTPDL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 67/218 (31%)
Ion_trans_2 221..295 CDD:285168 33/74 (45%)
KCNQ_channel <619..719 CDD:281513
Kcna6NP_038596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
BTB_POZ_KCNA6 41..170 CDD:349714
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..238
Ion_trans 258..468 CDD:366146 66/212 (31%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 360..373 3/12 (25%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 422..427 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 488..513 1/2 (50%)
PDZ-binding. /evidence=ECO:0000255 527..529
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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