DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and Kcns1

DIOPT Version :10

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_446406.1 Gene:Kcns1 / 117023 RGDID:621524 Length:497 Species:Rattus norvegicus


Alignment Length:427 Identity:104/427 - (24%)
Similarity:168/427 - (39%) Gaps:99/427 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IYAFYDIRGYKG-------KCRPGRPNSERILQPR---------MSLLGKPLNYNRGTRRDVRY- 54
            ::||.....|.|       .|...|....|:.:||         .|:...|...:...|...|| 
  Rat   100 VFAFGQEADYWGLGENALATCCRARYLERRVTRPRAWDEDSDAPSSVDPCPDEISDVQRELARYG 164

  Fly    55 ----RRLQSRLYNFLERP-RGLHAIFYHVMVFLMVFTCLALSVFSTIKEYE-------------- 100
                .||:.||:..:|.| ..|.:..:..:...:|...:|.....::.||:              
  Rat   165 AARCGRLRRRLWLTMENPGYSLPSKLFSCVSIGVVLASIAAMCIHSLPEYQAREAAAAVAAVAAG 229

  Fly   101 -------EDAVYILFRMEILVVIWFTMEFGAR-LWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTI 157
                   :|.|  |.|:|...:.||:.|..:| |.:...|:          |...|..:||||::
  Rat   230 RSAEDVRDDPV--LRRLEYFCIAWFSFEVSSRLLLAPSTRN----------FFCHPLNLIDIVSV 282

  Fly   158 LASIVVL--------GMGTSG----------QVFATSALRGLRFFQILRMVRMDRRGGTWKLLGS 204
            |...:.|        ..|.||          |||     |.:|.|::|::.|  ...|...|..:
  Rat   283 LPFYLTLLAGAALGDRRGASGEELGDLGKVVQVF-----RLMRIFRVLKLAR--HSTGLRSLGAT 340

  Fly   205 VVYAHRQELITTMYIGFLGLIFASFLVYMWEKDVNDKFSNFAQALWWGVITLCTVGYGDMVPITW 269
            :.:::|:..|..:|:.....:|:.......||:|.  |.......|||.:::.||||||:||.|.
  Rat   341 LKHSYREVGILLLYLAVGVSVFSGVAYTAEEKNVG--FDTIPACWWWGTVSMTTVGYGDVVPETV 403

  Fly   270 QGKLIASCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQAVWRCYAADEHS 334
            .|||.||.|.|.||...|||..|:.:.|:          |..||::    .::|..|.....|..
  Rat   404 AGKLAASGCILGGILVVALPITIIFNKFS----------HFYRRQK----ALEAAVRSSGQREFE 454

  Fly   335 VSVATWNIHRVALPSPPASRASSSFKHNTSFVARLPT 371
            ..::  ::..|:..|...||.:|....:|....:.|:
  Rat   455 DLLS--SVDGVSDVSLETSRETSQEGRSTDLETQAPS 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 72..305 CDD:459842 70/272 (26%)
KCNQ_channel <619..719 CDD:460954
Kcns1NP_446406.1 BTB_POZ 21..126 CDD:453885 6/25 (24%)
Ion_trans 188..439 CDD:459842 73/281 (26%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 392..397 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 464..497 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.

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