DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and LOC100537815

DIOPT Version :10

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_003198877.1 Gene:LOC100537815 / 100537815 -ID:- Length:493 Species:Danio rerio


Alignment Length:524 Identity:120/524 - (22%)
Similarity:191/524 - (36%) Gaps:179/524 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DPDNDIYAFYDIRGYKGKCRPGRPNSERILQPRMS--LLGKPLN------------YNRGT---- 48
            ||..:.| |:|         ..||:.:.||....|  .|.:|:|            |..|.    
Zfish    69 DPLRNEY-FFD---------RNRPSFDAILYYYQSGGRLRRPVNVTLDVFSEEIRFYELGDEAIE 123

  Fly    49 --RRDVRYRRLQSR-------------LYNFLER--PRGLHAIFYHVMVFL--MVFTCL-ALSVF 93
              |.|..:.:.:.|             |:.:.|.  |..:.||. .|||.|  :|..|| .|.:|
Zfish   124 IFREDEGFIKEEERPLPDNEFQKQVWLLFEYPESSGPARIIAII-SVMVILISIVSFCLETLPIF 187

  Fly    94 STIKE-------------------YEEDAVYILFRMEILVVIWFTMEFGARLWSSGCRSRYQGCL 139
            .:.:|                   |..|..:||   |.|.:|||:.||..|.::         |.
Zfish   188 RSDEEEMHKVPVNVNNSTTSYTSTYFTDPFFIL---ETLCIIWFSFEFLVRFFA---------CP 240

  Fly   140 GRLKFVKRPFCIIDIVTILASIVVLGM--------GTSG-QVFATSALRGLRFFQILRMVRMDRR 195
            .:..|......:||:|.|:...:.||.        |..| |..:.:.||.:|..::.|:.::.|.
Zfish   241 SKASFFVNIMNMIDVVAIIPYFITLGTELAEKAEDGQQGQQAMSLAILRVIRLVRVFRIFKLSRH 305

  Fly   196 GGTWKLLGSVVYAHRQELITTMYIGFLGLIFASFLVYMWEKD-VNDKFSNFAQALWWGVITLCTV 259
            ....::||..:.|..:||...::..|:|:|..|..||..|.| ...:|.:...|.||.|:::.||
Zfish   306 SKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADEPESQFYSIPDAFWWAVVSMTTV 370

  Fly   260 GYGDMVPITWQGKLIASCCALLGISFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQAV 324
            |||||||.|..||::.|.||:.|:...|||..::.|.|                           
Zfish   371 GYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF--------------------------- 408

  Fly   325 WRCYAADEHSVSVATWNIHRVALPSPPASRASSSFKHNTSFVARLPTIRRHKSQTIQTPGGGDGG 389
                                            :.|.|.       .|....::|.:|        
Zfish   409 --------------------------------NYFYHR-------ETEGEEQAQYLQ-------- 426

  Fly   390 GVSKPPGSSRASTRYTRTIRDINASVENLEVVQNGKSMNPSFSEDSVAETTCLKNIKNSDASQPA 454
             |:.|...|:...:.:|:...|:.| :.:|:.:...:.|..|.|:::....|             
Zfish   427 -VNVPKADSQEELKGSRSGSTISKS-DYMEIQEGVNNSNEDFQEENLKTANC------------- 476

  Fly   455 TLAN 458
            ||||
Zfish   477 TLAN 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 72..305 CDD:459842 79/264 (30%)
KCNQ_channel <619..719 CDD:460954
LOC100537815XP_003198877.1 BTB_POZ 32..158 CDD:453885 20/98 (20%)
Ion_trans 161..415 CDD:459842 81/332 (24%)
Blue background indicates that the domain is not in the aligned region.

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