DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcnv2

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_002934230.1 Gene:kcnv2 / 100498412 XenbaseID:XB-GENE-940169 Length:562 Species:Xenopus tropicalis


Alignment Length:332 Identity:79/332 - (23%)
Similarity:133/332 - (40%) Gaps:83/332 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PNSERI-LQPRMSLLGKPLNYNRGTR------------RDVRYRRLQSRLYNFLERPRGLHAIFY 76
            |...|| .:.|...|.:.|...|..|            |.:.|..|:.|::|.:|:|      |.
 Frog   207 PRCCRISFEERQDDLNEQLKVQRELRAEMETEENEELFRGMLYGHLRRRIWNMMEKP------FS 265

  Fly    77 HVMV--------FLMVFTCLALSVFSTIKEYEEDAVY-----------ILFRMEILVVIWFTMEF 122
            .|..        |.::.:.:|::: :|:    ||..|           .|..:|.|.:.:||:|:
 Frog   266 SVTAKAIAVASSFFVLISVVAMTL-NTV----EDMQYKNAAGLPSGKPYLEHVETLCITFFTLEY 325

  Fly   123 GARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVTILASIVVL-----------GMGTS------- 169
            ..||.|:.....         |.:.....:|::.||...:.:           |.|:|       
 Frog   326 LLRLMSTPDLQH---------FGRSVLNAVDLIAILPLYLQMLLESFADEDRSGKGSSHEHEIEA 381

  Fly   170 -------GQVFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMYIGFLGLIFA 227
                   |||     ||.:|..:|.|::::.|.....:..|..:....|::........:|:...
 Frog   382 VGRVGKLGQV-----LRIMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLFLFIAMGVFSF 441

  Fly   228 SFLVYMWEKDVN-DKFSNFAQALWWGVITLCTVGYGDMVPITWQGKLIASCCALLGISFFALPAG 291
            |.:||..|.||: ..|::...|.||..:::.||||||:.|.|..|:|.|..|...||....:|..
 Frog   442 SAMVYSVEHDVSGTNFTSIPHAWWWAAVSISTVGYGDVYPETHLGRLFAFLCIAFGIILNGMPIS 506

  Fly   292 ILGSGFA 298
            ||.:.|:
 Frog   507 ILYNKFS 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 59/236 (25%)
Ion_trans_2 221..295 CDD:285168 28/74 (38%)
KCNQ_channel <619..719 CDD:281513
kcnv2XP_002934230.1 BTB 112..212 CDD:197585 1/4 (25%)
BTB 112..201 CDD:295341
Ion_trans 310..520 CDD:278921 56/218 (26%)
Ion_trans_2 445..508 CDD:285168 24/62 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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