DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcns1

DIOPT Version :10

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_002938059.3 Gene:kcns1 / 100492665 XenbaseID:XB-GENE-6051189 Length:451 Species:Xenopus tropicalis


Alignment Length:44 Identity:16/44 - (36%)
Similarity:20/44 - (45%) Gaps:10/44 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 IVNDFNLTCEENLWKVTLVGTVHSIGQ---FVSLAMSGIISDRF 175
            :|||       .:..||.|..||.|.|   ..:|...|:.||||
 Frog   236 LVND-------QIILVTPVTVVHVIDQDSPLYALDRKGLASDRF 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 72..305 CDD:459842 16/44 (36%)
KCNQ_channel <619..719 CDD:460954
kcns1XP_002938059.3 BTB_POZ_KCNS1 18..123 CDD:349733
Ion_trans 185..420 CDD:459842 16/44 (36%)
Blue background indicates that the domain is not in the aligned region.

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