DRSC/TRiP Functional Genomics Resources

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Protein Alignment KCNQ and kcnc1b

DIOPT Version :9

Sequence 1:NP_788300.3 Gene:KCNQ / 36071 FlyBaseID:FBgn0033494 Length:993 Species:Drosophila melanogaster
Sequence 2:XP_005174318.1 Gene:kcnc1b / 100334453 ZFINID:ZDB-GENE-080414-3 Length:598 Species:Danio rerio


Alignment Length:309 Identity:86/309 - (27%)
Similarity:137/309 - (44%) Gaps:51/309 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 RDVRYRRLQSRLYNFLERPRG-------LHAIFYHVMVFLMVFTCLALSVFSTI----KEY---- 99
            |..|:.|.|.:.:...|.|..       ..|..:.::|.:..|.......|:.|    :.|    
Zfish   164 RSGRWSRWQKKAWALFEDPYSSKYARWVAFASLFFILVSITTFCLETHEAFNPIINRTETYMEGN 228

  Fly   100 --------EEDAVYILFRMEILVVIWFTMEFGARLWSSGCRSRYQGCLGRLKFVKRPFCIIDIVT 156
                    |.:.:..|..:|.:.|:|||.||..|:.:         |..:|||::....|||.|.
Zfish   229 ETVERIFPETETMVQLTYIEGVCVVWFTFEFIIRVTT---------CPDKLKFLRNTLNIIDFVA 284

  Fly   157 ILASIVVLGM-GTSGQVF--ATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTMY 218
            ||...:.:|: |.|.:..  ....||.:||.:|||:.::.|.....::||..:.|...|.|..:.
Zfish   285 ILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFILLII 349

  Fly   219 IGFLG-LIFASFLVYMWE--KDVND-------KFSNFAQALWWGVITLCTVGYGDMVPITWQGKL 273
            ...|| ||||:.:.|...  ::.||       .|.|.....||.|:|:.|:|||||.|.|..|.|
Zfish   350 FLALGVLIFATMIYYAERIGRNPNDPDASSDTHFKNIPIGFWWAVVTMTTLGYGDMYPQTTSGML 414

  Fly   274 IASCCALLGISFFALPAGILGSGF------ALKVQQQQRQKHMIRRRQP 316
            :.:.|||.|:...|:|..::.:.|      |:..|:..::|:...||.|
Zfish   415 VGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIRRPP 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KCNQNP_788300.3 Ion_trans 100..305 CDD:278921 70/223 (31%)
Ion_trans_2 221..295 CDD:285168 31/83 (37%)
KCNQ_channel <619..719 CDD:281513
kcnc1bXP_005174318.1 BTB 10..112 CDD:197585
BTB_2 10..104 CDD:280393
Ion_trans 230..446 CDD:278921 68/224 (30%)
Ion_trans_2 <389..436 CDD:285168 20/46 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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