DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18011 and Sry-delta

DIOPT Version :10

Sequence 1:NP_610559.1 Gene:CG18011 / 36068 FlyBaseID:FBgn0033491 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster


Alignment Length:533 Identity:113/533 - (21%)
Similarity:182/533 - (34%) Gaps:140/533 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 TPPAAKPAKKTVPSRPLTKVLRPVPIIPTREPSARIRNRAAAASNVTPDTSRSPEPPETPSTEDA 169
            |..|..|:.:...|..||.:...:......:|.||:                      .|.....
  Fly    25 TLSAKVPSSQKTVSLVLTHLANCIQTQLDLKPGARL----------------------CPRCFQE 67

  Fly   170 VSKSEPKLVSKVADQEHFSVLIQNILDEEEAVVEDETAVKEESSEAVQVTEETEAPGQIVILNSE 234
            :|..:..:|:.:..|:..:..::..|..|..|        .||.|.:.| ||.|.|      .|:
  Fly    68 LSDYDTIMVNLMTTQKRLTTQLKGALKSEFEV--------PESGEDILV-EEVEIP------QSD 117

  Fly   235 AVTDTNPDENVYIYEHEDVMDPNLDNVKVKPISCSSRLVAQAEESQSDDDIDEGETSNVVLFNFV 299
            ..||.:.:.:....|.  |.|....:.::|      |.....||.:.|||.||      .:...|
  Fly   118 VETDADAEADALFVEL--VKDQEESDTEIK------REFVDEEEEEDDDDDDE------FICEDV 168

  Fly   300 DIKEKDEVDNIPEYLATVVKTS------FEKLTFQWCTVCKHCSLKCPTFESLFSHLSKAHKSRR 358
            |:.:.:         |...|:|      .:|...|.||.   |.....::..|..|:|:.| |::
  Fly   169 DVGDSE---------ALYGKSSDGEDRPTKKRVKQECTT---CGKVYNSWYQLQKHISEEH-SKQ 220

  Fly   359 DVYECPIEGCNKELKGRKFLAMHLVLLHAPVAEIPIYGSCPECKLTFSNILQYNKHSCAHVIKKK 423
            ..:.|||  |....:..::|.:|: .||....|    ..|..|..:||..:...:|...|..|||
  Fly   221 PNHICPI--CGVIRRDEEYLELHM-NLHEGKTE----KQCRYCPKSFSRPVNTLRHMRMHWDKKK 278

  Fly   424 RGFRSYCEMCSLEFPSWKRFNFHSQFHLEKHRPRACFVCDYATTNIDELFQHLNYSHEPVGTLFC 488
                ..||.|.|.|         ||.:|                    |:.|..........:.|
  Fly   279 ----YQCEKCGLRF---------SQDNL--------------------LYNHRLRHEAEENPIIC 310

  Fly   489 DLCDRTFRDPSVFMEHNKSHANVSSTTYSCSECMANFESRGRLNGHMRAMHGSVISCELCSREFA 553
            .:|:.:|:....|..|...|.......| ||.|..:|..|..|..||:...|.|:   ...||.|
  Fly   311 SICNVSFKSRKTFNHHTLIHKENRPRHY-CSVCPKSFTERYTLKMHMKTHEGDVV---YGVREEA 371

  Fly   554 TEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETLLAHVNSVKTACFGSKIDVELLRDAYVCEYC 618
            ......:..:.|  ::.|....:...::||:.|                        ::..|..|
  Fly   372 PADEQQVVEELH--VDVDESEAAVTVIMSDNDE------------------------NSGFCLIC 410

  Fly   619 SSYFKEKDCLQAH 631
            ::.|:.|..|:.|
  Fly   411 NTNFENKKELEHH 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18011NP_610559.1 C2H2 Zn finger 488..508 CDD:275368 5/19 (26%)
C2H2 Zn finger 518..538 CDD:275368 8/19 (42%)
C2H2 Zn finger 545..565 CDD:275368 3/19 (16%)
C2H2 Zn finger 575..596 CDD:275371 3/20 (15%)
C2H2 Zn finger 754..775 CDD:275368
C2H2 Zn finger 780..801 CDD:275368
C2H2 Zn finger 809..829 CDD:275368
SUF4-like 852..>891 CDD:411020
C2H2 Zn finger 864..885 CDD:411020
C2H2 Zn finger 864..885 CDD:275368
C2H2 Zn finger 891..917 CDD:275368
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 48/196 (24%)
C2H2 Zn finger 225..245 CDD:275368 6/22 (27%)
C2H2 Zn finger 253..273 CDD:275368 5/19 (26%)
C2H2 Zn finger 281..301 CDD:275368 10/48 (21%)
C2H2 Zn finger 310..327 CDD:275370 4/16 (25%)
C2H2 Zn finger 339..359 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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