DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18011 and Neu2

DIOPT Version :10

Sequence 1:NP_610559.1 Gene:CG18011 / 36068 FlyBaseID:FBgn0033491 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster


Alignment Length:518 Identity:104/518 - (20%)
Similarity:158/518 - (30%) Gaps:199/518 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 TVCKHCSLKCPTFESLFSHLSKAHKSRR---DVYECPIE----GCNKELKGRKFLAMHLVLLHAP 388
            |:||.|.........:.....::|:..|   ||.|...|    ||::|::               
  Fly    36 TICKSCLEDAQNAFDIIETYERSHQFYRFLKDVREEESENDGSGCSEEVE--------------- 85

  Fly   389 VAEIPIY--------GSCPECKLTFSNILQYNKHSCAHVIKKKRGFRSYCEMCSLEFPSWKRFNF 445
            .||..:.        |:.|:.            :.|....|:|.||.  |..|...|........
  Fly    86 AAERDLQDGADDVDSGNEPDI------------NECDIKAKEKPGFS--CSHCPKSFQVKSNLKV 136

  Fly   446 HSQFHLEKHRPRACFVCDYATTNIDELFQHLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHAN 510
            |.:.|..: ||                             ..|.||.::|...|....|.::|  
  Fly   137 HMRSHTGE-RP-----------------------------FTCSLCPKSFGYSSGLQNHMRTH-- 169

  Fly   511 VSSTTYSCSECMANFESRGRLNGHMRAMH---GSVISCELCSREFATEATYNIHMKKHLIIEKDV 572
            .....:.||.|..:|.:...|..|:: ||   || :.|..|.:.|.|    ::.:|:||....| 
  Fly   170 TGERPFQCSHCPRSFTAGHHLKAHIQ-MHERRGS-LRCPYCQKCFLT----SLILKQHLATHTD- 227

  Fly   573 HVCSTCGLLSDSRETLLAHVNSVKTACFGSKIDVELLRDAYVCEYCSSYFKEKDCLQAHRDSGVH 637
                         ||                        .:.|..||..|:.:..|..|  ..||
  Fly   228 -------------ET------------------------QFKCSQCSKSFQVEHELWMH--MRVH 253

  Fly   638 KDGVFLCQPCGKEFP-HMKLYRHHLRNYQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLYT 701
            ::.:|.|..|.|:|. |..|.||..||                       ..|::|    :....
  Fly   254 QERLFTCGHCSKDFALHAYLKRHLSRN-----------------------ARCSQS----SKASA 291

  Fly   702 HKRRTHESASKQAEKSSKSAQEWVCQFCLKECRSKMSLSVHVARSHNNDNVTCPLCNSSYKSHDA 766
            ||...|..|.|             |..|.|....:.:||.|: :||..:.   ||.....||..:
  Fly   292 HKTLGHSKALK-------------CGKCPKTFTDRSALSTHL-KSHTKNK---PLLEGPCKSSGS 339

  Fly   767 LAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVVHSNKKRYSCSVCQKGFYHKSEMEAHQKLH 829
            ...|.                             ::.:|.:.||.|.:.|..||.:..|.:.|
  Fly   340 KPAHS-----------------------------NAQRKPFKCSSCPRTFSRKSALLTHLQTH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18011NP_610559.1 C2H2 Zn finger 488..508 CDD:275368 6/19 (32%)
C2H2 Zn finger 518..538 CDD:275368 6/19 (32%)
C2H2 Zn finger 545..565 CDD:275368 5/19 (26%)
C2H2 Zn finger 575..596 CDD:275371 2/20 (10%)
C2H2 Zn finger 754..775 CDD:275368 5/20 (25%)
C2H2 Zn finger 780..801 CDD:275368 0/20 (0%)
C2H2 Zn finger 809..829 CDD:275368 7/19 (37%)
SUF4-like 852..>891 CDD:411020
C2H2 Zn finger 864..885 CDD:411020
C2H2 Zn finger 864..885 CDD:275368
C2H2 Zn finger 891..917 CDD:275368
Neu2NP_649316.1 zf-AD 1..63 CDD:462262 5/26 (19%)
COG5048 <119..241 CDD:227381 38/199 (19%)
C2H2 Zn finger 121..141 CDD:275368 4/19 (21%)
zf-H2C2_2 133..156 CDD:463886 7/52 (13%)
C2H2 Zn finger 149..169 CDD:275368 6/19 (32%)
zf-H2C2_2 162..185 CDD:463886 5/24 (21%)
C2H2 Zn finger 177..197 CDD:275368 6/20 (30%)
C2H2 Zn finger 205..225 CDD:275368 7/23 (30%)
zf-C2H2_8 206..286 CDD:464935 29/146 (20%)
C2H2 Zn finger 233..253 CDD:275368 6/21 (29%)
C2H2 Zn finger 260..297 CDD:275368 14/63 (22%)
C2H2 Zn finger 303..323 CDD:275368 6/20 (30%)
C2H2 Zn finger 353..373 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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