DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18011 and CG8944

DIOPT Version :10

Sequence 1:NP_610559.1 Gene:CG18011 / 36068 FlyBaseID:FBgn0033491 Length:985 Species:Drosophila melanogaster
Sequence 2:NP_573065.1 Gene:CG8944 / 32517 FlyBaseID:FBgn0030680 Length:762 Species:Drosophila melanogaster


Alignment Length:958 Identity:173/958 - (18%)
Similarity:284/958 - (29%) Gaps:384/958 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LHCSVFSTKYQYQEIFDEF-----GIELGLQSL-----------------------LSRHYQLEV 47
            |.|...|.|:.|   ||.|     .:.||.||:                       |...:::|.
  Fly    36 LRCIFCSEKFLY---FDSFIGHMQTVHLGDQSVANTSSRLPFNLGEPMSLSGRNGDLPNFHEIED 97

  Fly    48 SPD-------PQ---KQQLLCEVCVTNLIRLFDIDELEREREAAKDAAQGKDSKAEEDPIIITE- 101
            ..|       ||   ||:|....|       .|.|.:..|.:  .|..:..||:|:||..|:.| 
  Fly    98 LTDADTALLEPQMVIKQELQDLPC-------SDDDVVAGEED--DDEQRLNDSEADEDEAILPES 153

  Fly   102 -VQATPPAAKPAKKTVPSRPLTKVLRPVPIIPTREPSARIRNRAAAASNV----TPDTSRSPE-- 159
             |.......:..||....|             .|:.|:.:.......|::    .||.|...:  
  Fly   154 DVPVVSSKTRARKKVTKQR-------------QRDMSSELLIAGDGDSSMDDYGDPDHSYMDDNS 205

  Fly   160 -------------------PPETPSTEDAVSKS----EPKLVSKVADQEHFSVLIQN-------- 193
                               ..:..|.::.|.:|    :.::...:.|::....||.:        
  Fly   206 GEYMDFAGFDGVNHSGFGTESDFLSYDEMVEESLLGRDREVTMHIKDRKMIQFLIHSYQRNPFLW 270

  Fly   194 --------------------ILDEEE----AVVEDETAVKEESSEAVQVTEETEAPGQIVILNSE 234
                                :|:.:.    ::.:|....|.::...|...|          .|..
  Fly   271 DHGNAQFRDRVKRARFLDWIVLEFKSRFNISLAKDAITRKWDNLRTVYKRE----------CNRM 325

  Fly   235 AVTDTNPDENVY---------IYEHEDVMDPNLDNVKVKPISCSSRLVAQAEESQSDDDIDEGET 290
            |:..||.....|         :|.:.|.|    .:..||..|...|..|           ...:|
  Fly   326 ALEKTNISTLWYFKELHFLNEVYSYNDKM----SDAVVKETSYRRRFSA-----------IWNDT 375

  Fly   291 SNVVLFNFV------------DIKEKDEVDNIPEYLATVVKTSFEKLTFQWCTVCKHCSLKCPTF 343
            |...|.:.|            |.:.|:........:|..::...:..|.|   :.|..|      
  Fly   376 STAKLLSMVKRYQCFYNRFDPDYRSKERRGEGLHQMAIELQQLIDVTTIQ---ISKRIS------ 431

  Fly   344 ESLFSHLSKAHKSRRDVYECPIEGCNKELKGRKFLAMHLVL--LHAPVAEIPIYGSCPECKLTFS 406
                       :.|.|..:..:|..|.|..|:||:|.:|..  :|....:||.: .|..|.....
  Fly   432 -----------QLRFDYSKQKMERLNSERLGKKFIANYLYYDQMHFMDDDIPPF-KCAHCPEIVQ 484

  Fly   407 NILQYNKHSCAHVIKKKRGFRSYCEMCSLEFPSWKRFNFHSQFHLEKHRPRACFVCDYATTNIDE 471
            .:.:.:.|...|......|:  ||.:||::|.:.:.|:.|.|.||               ..:.|
  Fly   485 TLRELDLHMLTHQPSLGGGY--YCNICSIQFHNAQEFDNHKQLHL---------------GGVTE 532

  Fly   472 LFQHLNYSHEPVGTLFCDLCDRTFRDPSVFMEHNKSHAN-----VSSTTYSCSE--------CMA 523
            :            ...|:||..:||:.:.:.||.:.|..     ..:..:|..|        .:.
  Fly   533 I------------KFNCELCTASFREKANYDEHLRRHNEELFLPSLALNHSIMEGGLGDDEIGVE 585

  Fly   524 NFESRGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIEKDVHVCSTCGLLSDSRETL 588
            ..||||  :|..|            .|..|.:||.:       :::.|..:....|..|....|.
  Fly   586 GEESRG--SGSRR------------KRRHAAKATDD-------MVDDDDRIGGGGGGGSGGGGTD 629

  Fly   589 LAHVNSVKTACFGSKIDVELLRDAYVCEYCSSYFKEKDCLQAHRDSGVHKDGVFLCQPCGKEFPH 653
            :|                    ..|.|:.|...|.....|.|||.  ||:|              
  Fly   630 IA--------------------KPYGCDVCRRSFATPGHLNAHRI--VHQD-------------- 658

  Fly   654 MKLYRHHLRNYQQLRSDSTHRRLEICVYYMCDQENCTESYVNWNSLYTHKRRTHESASKQAEKSS 718
                                 ..|.|  |.||...|.:|:|..|||:.|                
  Fly   659 ---------------------ERERC--YKCDYPQCNKSFVARNSLFEH---------------- 684

  Fly   719 KSAQEWVCQFCLKECRSKMSLSVHVARSHNNDNVTCPLCNSSYKSHDALAKHHAYWHEPIECPEC 783
                       ||:             .::|:...|.:|..::||                    
  Fly   685 -----------LKQ-------------HYSNEEFKCDICGKTFKS-------------------- 705

  Fly   784 FKIVKNRRNYDTHVNVVHSNKKRYSCSVCQKGFYHKSEMEAHQKLHGQ 831
               .||.:|:    ..:|...|||.|.:|...|...:.:..|::.|.:
  Fly   706 ---TKNLQNH----KQIHDKIKRYVCQICGSAFAQAAGLYLHKRRHNR 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18011NP_610559.1 C2H2 Zn finger 488..508 CDD:275368 7/19 (37%)
C2H2 Zn finger 518..538 CDD:275368 7/27 (26%)
C2H2 Zn finger 545..565 CDD:275368 4/19 (21%)
C2H2 Zn finger 575..596 CDD:275371 4/20 (20%)
C2H2 Zn finger 754..775 CDD:275368 4/20 (20%)
C2H2 Zn finger 780..801 CDD:275368 3/20 (15%)
C2H2 Zn finger 809..829 CDD:275368 4/19 (21%)
SUF4-like 852..>891 CDD:411020
C2H2 Zn finger 864..885 CDD:411020
C2H2 Zn finger 864..885 CDD:275368
C2H2 Zn finger 891..917 CDD:275368
CG8944NP_573065.1 MADF_DNA_bdg 259..344 CDD:463144 12/94 (13%)
MADF 379..472 CDD:214738 20/112 (18%)
C2H2 Zn finger 476..496 CDD:275368 3/19 (16%)
C2H2 Zn finger 506..526 CDD:275368 7/19 (37%)
C2H2 Zn finger 537..557 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368 7/21 (33%)
COG5048 <666..734 CDD:227381 26/134 (19%)
C2H2 Zn finger 666..688 CDD:275368 11/61 (18%)
C2H2 Zn finger 696..716 CDD:275368 7/46 (15%)
C2H2 Zn finger 724..744 CDD:275368 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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