DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and grhl2a

DIOPT Version :10

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:NP_001313462.2 Gene:grhl2a / 555744 ZFINID:ZDB-GENE-050913-123 Length:593 Species:Danio rerio


Alignment Length:431 Identity:103/431 - (23%)
Similarity:166/431 - (38%) Gaps:142/431 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 DPAKIEIGSANGA---THAED--HKFQYILAAATSIATKNNEETLTYLNQGQSYEIKLKKIGDLS 437
            ||.:..:.:...|   ||.:.  :.|||.:.|:.|:..|..:..:.|||:||.|.|.|.:.|...
Zfish   196 DPMRYRVPTTPAAEDFTHEQAGLNMFQYNIEASRSVREKAADGPMVYLNKGQFYGITLSETGANK 260

  Fly   438 LYRDKI--LKSVIKICFHERRLQFMEREQMQQW-----QQSRPGERIIEV-DVPLSYGLCHVSQP 494
            ..|..|  :::|:.:.|.:.:.:   .||::.|     :|....:|:::: |...|:......:.
Zfish   261 GLRHPISKVRTVVMVVFGQEKCR---DEQLKHWNYWHTRQHTAKQRVLDIADYKESFNTIGNIEE 322

  Fly   495 LSSGSLNTVEIFWDPLKEVGVYIKVNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSG 559
            :   :.|.|...||..:|..|:|.|||:||:|:.:|  |.||:|..:||:||..|..|       
Zfish   323 I---AYNAVSFTWDVNEEAKVFITVNCLSTDFSSQK--GVKGLPLMIQIDTYSYNNRS------- 375

  Fly   560 GSNNSAIASGSGSSGSAAPASPERTPSAGSNGKQAVHAAACQIKVFKLKGADRK-----HKQDRE 619
                                            .:.:|.|..|||||..|||:||     .||.|:
Zfish   376 --------------------------------NRPIHRAYAQIKVFCDKGAERKIRDEEKKQLRK 408

  Fly   620 KIQ---------------------KRP-----------QSEQEKFQPSYECTIMNDISLDLVMSA 652
            |::                     |||           :|:...|.|        |:.|:.:..|
Zfish   409 KVKGQTVGGHGQDGKRGNLASLPPKRPDITLFKAMTDLESQPVLFIP--------DVHLNNLQRA 465

  Fly   653 TTTGCYSPEYMKLWPNSPVHIPKYDGMLPFAPSAA-SPATSSS-------------PIAINSVTS 703
            .....:..|.|:   |..|.:.:     ||..|.| ||.|..|             ...:.....
Zfish   466 GQVFSFGVEEME---NDGVAVKR-----PFGTSEADSPPTKYSREERKVLLYVRREADEVFDALM 522

  Fly   704 TNSPTLK-LMDATN--------------MVSPQHVPADMDD 729
            ..||||| |::|.:              ..|.:.:..:|||
Zfish   523 LRSPTLKSLLEAISGKYSVPVEKMTKIYKKSKKGILVNMDD 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..627 CDD:461338 69/280 (25%)
SAM_CP2-like 739..805 CDD:188936
grhl2aNP_001313462.2 None
Blue background indicates that the domain is not in the aligned region.

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