DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and grhl1

DIOPT Version :10

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_001923763.1 Gene:grhl1 / 324942 ZFINID:ZDB-GENE-030131-3665 Length:613 Species:Danio rerio


Alignment Length:484 Identity:116/484 - (23%)
Similarity:185/484 - (38%) Gaps:151/484 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 WDSLDIGQSENSPTA------SQSGDLPSKVA---HQEKEKHKREKHSGRSSWSDDIGFDLNAEF 260
            |.|.    .||..||      |.:||..|..|   ..:..|..|:|.:.....:|.:|.|::.  
Zfish    33 WKSF----LENPLTAATKAMMSINGDEDSAAALGLLYDYYKVPRDKRTISQQKTDVLGSDVDP-- 91

  Fly   261 NSNSYLNNENFLSFSPTLTT-----------LKQEP--------QTDQIK----PSPKVSLDNAS 302
                  |..|.|  :|...|           ||..|        |..|.|    |||..::    
Zfish    92 ------NKRNML--TPLQETSMQLGDNRIQVLKGVPLNIVLPGNQHVQDKRGLFPSPDTTV---- 144

  Fly   303 ASPSIAIAKLDEVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSP-------------- 353
               :::||.:      .|.::..:..::|........|         |..|              
Zfish   145 ---TVSIAPV------ASNSVKTEGPSHGFSVTVPNPH---------CAEPDSHTVVFDRQLPHN 191

  Fly   354 QGSPLANAEYELNEKGKPQQLSVLD-PAKIEIGSANGATHAEDH---------KFQYILAAATSI 408
            |.||  |.:....:...|:...|.. |..:::  ..|....:|:         .|:|||.|:.|:
Zfish   192 QFSP--NTQPRTPDSTFPENPDVFSFPGDLQL--RMGPITQDDYGTFDTVSGNNFEYILEASKSL 252

  Fly   409 ATKNNEETLTYLNQGQSYEIKLKKIGDLSLYRDKILK--SVIKICFHERRLQFMEREQMQQW--- 468
            ..|:.:.|:||||:||.|.|.|::..:..|.:..|.|  ||:.:.|.|.:   ...:|::.|   
Zfish   253 RQKSGDGTMTYLNKGQFYPITLRETDNGKLLQGPICKVRSVVMVVFGEEK---SRDDQLKHWKYW 314

  Fly   469 --QQSRPGERIIEV-DVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIKVNCISTEFTPKK 530
              :|....:|.|:: |...|:   :....:...|.|.:...||..:|..::|.|||:||:|:.:|
Zfish   315 HSRQHTAKQRCIDIADYKESF---NTISNIEEISYNAISFTWDISEEAKIFISVNCLSTDFSSQK 376

  Fly   531 HGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPERTPSAGSNGKQAV 595
              |.||:|..:||:||..|..|                                       .:.:
Zfish   377 --GVKGLPLNIQIDTYSYNNRS---------------------------------------NKPI 400

  Fly   596 HAAACQIKVFKLKGADRKHKQDREKIQKR 624
            |.|.||||||..|||:||.:.:..|..:|
Zfish   401 HRAYCQIKVFCDKGAERKIRDEERKQSRR 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..627 CDD:461338 70/249 (28%)
SAM_CP2-like 739..805 CDD:188936
grhl1XP_001923763.1 CP2 225..432 CDD:461338 70/252 (28%)
Blue background indicates that the domain is not in the aligned region.

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