DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and grhl1

DIOPT Version :9

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_001923763.1 Gene:grhl1 / 324942 ZFINID:ZDB-GENE-030131-3665 Length:613 Species:Danio rerio


Alignment Length:484 Identity:116/484 - (23%)
Similarity:185/484 - (38%) Gaps:151/484 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 WDSLDIGQSENSPTA------SQSGDLPSKVA---HQEKEKHKREKHSGRSSWSDDIGFDLNAEF 260
            |.|.    .||..||      |.:||..|..|   ..:..|..|:|.:.....:|.:|.|::.  
Zfish    33 WKSF----LENPLTAATKAMMSINGDEDSAAALGLLYDYYKVPRDKRTISQQKTDVLGSDVDP-- 91

  Fly   261 NSNSYLNNENFLSFSPTLTT-----------LKQEP--------QTDQIK----PSPKVSLDNAS 302
                  |..|.|  :|...|           ||..|        |..|.|    |||..::    
Zfish    92 ------NKRNML--TPLQETSMQLGDNRIQVLKGVPLNIVLPGNQHVQDKRGLFPSPDTTV---- 144

  Fly   303 ASPSIAIAKLDEVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSP-------------- 353
               :::||.:      .|.::..:..::|........|         |..|              
Zfish   145 ---TVSIAPV------ASNSVKTEGPSHGFSVTVPNPH---------CAEPDSHTVVFDRQLPHN 191

  Fly   354 QGSPLANAEYELNEKGKPQQLSVLD-PAKIEIGSANGATHAEDH---------KFQYILAAATSI 408
            |.||  |.:....:...|:...|.. |..:::  ..|....:|:         .|:|||.|:.|:
Zfish   192 QFSP--NTQPRTPDSTFPENPDVFSFPGDLQL--RMGPITQDDYGTFDTVSGNNFEYILEASKSL 252

  Fly   409 ATKNNEETLTYLNQGQSYEIKLKKIGDLSLYRDKILK--SVIKICFHERRLQFMEREQMQQW--- 468
            ..|:.:.|:||||:||.|.|.|::..:..|.:..|.|  ||:.:.|.|.:   ...:|::.|   
Zfish   253 RQKSGDGTMTYLNKGQFYPITLRETDNGKLLQGPICKVRSVVMVVFGEEK---SRDDQLKHWKYW 314

  Fly   469 --QQSRPGERIIEV-DVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIKVNCISTEFTPKK 530
              :|....:|.|:: |...|:   :....:...|.|.:...||..:|..::|.|||:||:|:.:|
Zfish   315 HSRQHTAKQRCIDIADYKESF---NTISNIEEISYNAISFTWDISEEAKIFISVNCLSTDFSSQK 376

  Fly   531 HGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPERTPSAGSNGKQAV 595
              |.||:|..:||:||..|..|                                       .:.:
Zfish   377 --GVKGLPLNIQIDTYSYNNRS---------------------------------------NKPI 400

  Fly   596 HAAACQIKVFKLKGADRKHKQDREKIQKR 624
            |.|.||||||..|||:||.:.:..|..:|
Zfish   401 HRAYCQIKVFCDKGAERKIRDEERKQSRR 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..624 CDD:282385 69/247 (28%)
SAM_CP2-like 739..805 CDD:188936
grhl1XP_001923763.1 CP2 241..432 CDD:282385 69/236 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577685
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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