DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and Grhl3

DIOPT Version :9

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_008762438.1 Gene:Grhl3 / 298555 RGDID:1308320 Length:603 Species:Rattus norvegicus


Alignment Length:463 Identity:117/463 - (25%)
Similarity:189/463 - (40%) Gaps:111/463 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 IGQSENSPTASQSGDLPSKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSNSYLN---NENF 271
            :|..|....:|.:|.        ..::.|:..||  ..:..|:     |...|.::|.   .|| 
  Rat    68 MGPKEKRILSSSTGG--------RNDQGKKYYHS--MDYEPDL-----APLESPTHLMKFLTEN- 116

  Fly   272 LSFSPTLTTLKQEPQTDQIKPSPKVSLDNASASPSIAIAKLDEVQNSPSQAISG-QDSANGSGSA 335
            :|.||        ..|||:|.:..:.|:.|..:|    .|...:...||:..:| .||.....|.
  Rat   117 VSGSP--------DYTDQLKKNNLLGLEGALPTP----GKTSTLPPGPSKLEAGSMDSYLLPTSD 169

  Fly   336 ANGKHDVNSGLACGCGSPQGSPLANAEYELNEKGKPQQLSVLDPAKIEIGSANGATHAEDH---- 396
            ......:||......|.|   |....:.:...|..||: |:|.|..::  ::..|...||:    
  Rat   170 MYDNSSLNSLFESIHGVP---PTQRWQPDSTFKDDPQE-SLLFPDILK--TSPEAPCPEDYPSLK 228

  Fly   397 -KFQYILAAATSIATKNNEETLTYLNQGQSYEIKLKKIG---DLSLYRDKILKSVIKICFHERRL 457
             .|:|.|.:..:|..|..|..:.|||:||.|.:.|:...   .|||...|: |||:.|.|...::
  Rat   229 SDFEYTLGSPKAIHIKAGESPMAYLNKGQFYPVTLRTPAGGKGLSLSSSKV-KSVVMIVFDNDKV 292

  Fly   458 QFMEREQMQQWQQSRP--GERIIEV-DVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIKV 519
            ...:....:.|...:|  .:|:|:| |...::   :..|.:...:.|.:...|:..:|..|:|.|
  Rat   293 PVEQLRFWRHWHSRQPTAKQRVIDVADCKENF---NTVQHIEEVAYNALSFVWNVNEEAKVFIGV 354

  Fly   520 NCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPERT 584
            ||:||:|:.:|  |.||||..|||:||                                      
  Rat   355 NCLSTDFSSQK--GVKGVPLNLQIDTY-------------------------------------- 379

  Fly   585 PSAGSNGKQAVHAAACQIKVFKLKGADRKHKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLV 649
             ..|:..::.||.|.||||:|..|||:||.:.|          |:::|:...:|.       |..
  Rat   380 -DCGAGTERLVHRAVCQIKIFCDKGAERKMRDD----------ERKQFRRKVKCP-------DSS 426

  Fly   650 MSATTTGC 657
            .:|...||
  Rat   427 NNAGIKGC 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..624 CDD:282385 68/241 (28%)
SAM_CP2-like 739..805 CDD:188936
Grhl3XP_008762438.1 CP2 210..421 CDD:282385 71/267 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338253
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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