DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and Tfcp2

DIOPT Version :9

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_017172026.1 Gene:Tfcp2 / 21422 MGIID:98509 Length:566 Species:Mus musculus


Alignment Length:617 Identity:207/617 - (33%)
Similarity:309/617 - (50%) Gaps:173/617 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 PLAN--------AEYELNEKGKPQQL-----SVLDPAKIEIGSANGATHAEDHK-----FQYILA 403
            |||:        .:::.:..|..|:|     |:.|...:.|.....::...|::     |||:|.
Mouse     8 PLADEVIESGLVQDFDASLSGIGQELGAGAYSMSDVLALPIFKQEESSLPPDNENEILPFQYVLC 72

  Fly   404 AATSIATKNNEETLTYLNQGQSYEIKL---KKIGDLSLYRDKILKSVIKICFHERRLQFMEREQM 465
            ||||.|.|.::||||||||||||||::   :|:|:|.....|::||:.::.||:||||:.|.:|:
Mouse    73 AATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPELNGKLVKSIFRVVFHDRRLQYTEHQQL 137

  Fly   466 QQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIKVNCISTEFTPKK 530
            :.|:.:|||:||:::|:|:|.|:  :....:...|||||..|||.|...|:|:|:|||||||.:|
Mouse   138 EGWRWNRPGDRILDIDIPMSVGV--IDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRK 200

  Fly   531 HGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPERTPSAGSNGKQAV 595
            ||||||||||:||:|:.||.|.                             |.|        :.:
Mouse   201 HGGEKGVPFRVQIDTFKENGNG-----------------------------EYT--------EHL 228

  Fly   596 HAAACQIKVFKLKGADRKHKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATTTGCYSP 660
            |:|:|||||||.||||||.|.||||::||...|:||:|||||.||:             |.| ||
Mouse   229 HSASCQIKVFKPKGADRKQKIDREKMEKRTPHEKEKYQPSYETTIL-------------TEC-SP 279

  Fly   661 EYMKLWPNSPVHIPKYDGMLPFAPSAASPATSSSPIAINSVTSTNSPTLKLMDATNMVSPQHVPA 725
                 ||.           :.:..::.||..:||..:. |:...|.            ||.|.|.
Mouse   280 -----WPE-----------ITYVNNSPSPGFNSSHSSF-SLGEGNG------------SPNHQPE 315

  Fly   726 DMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFSGADIMRMSKEDLIQICGLADGIRMFNI 790
            .....:.|::|.:||.:..|||..:|.:.:...|..|||||:::::::|:|||||.|||||:||.
Mouse   316 PPPPVTDNLLPTTTPQEAQQWLHRNRFSTFTRLFTNFSGADLLKLTRDDVIQICGPADGIRLFNA 380

  Fly   791 LRAKTIAPRLTLYA--------------------SVDGCS------YNAIYLLSNTAKELQQKLF 829
            |:.:.:.||||:|.                    ..||.|      |:||||...||.||.:|: 
Mouse   381 LKGRMVRPRLTIYVCQESLQLREQQPQPQPQPQKQEDGDSNGTFFVYHAIYLEELTAVELTEKI- 444

  Fly   830 KMPGFYEFMAKASAQENGAGGAATAAAAALFNNWGMHSKYSGSGSNIFNDANKSCVYISGPSGIL 894
                                       |.||:               .:....|.:|..||:||.
Mouse   445 ---------------------------AQLFS---------------ISPHQISQIYKQGPTGIH 467

  Fly   895 VTITDEVLNNEIKDGSLYALEVQAGKVILKLI 926
            |.|:||::.| .::.:.:.|:....::...||
Mouse   468 VVISDEMVQN-FQEEACFILDTMEAQLPTLLI 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..624 CDD:282385 107/238 (45%)
SAM_CP2-like 739..805 CDD:188936 31/85 (36%)
Tfcp2XP_017172026.1 CP2 52..257 CDD:367976 107/243 (44%)
SAM_TFCP2 329..395 CDD:188988 31/65 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834671
Domainoid 1 1.000 182 1.000 Domainoid score I3442
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4134
Inparanoid 1 1.050 320 1.000 Inparanoid score I2507
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001863
OrthoInspector 1 1.000 - - otm42655
orthoMCL 1 0.900 - - OOG6_104886
Panther 1 1.100 - - O PTHR11037
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4859
SonicParanoid 1 1.000 - - X1220
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.920

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