DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and grhl2b

DIOPT Version :9

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_005159637.1 Gene:grhl2b / 100034503 ZFINID:ZDB-GENE-060503-719 Length:601 Species:Danio rerio


Alignment Length:435 Identity:108/435 - (24%)
Similarity:164/435 - (37%) Gaps:123/435 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 SKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSNSYLNNENFLSFSP---TLTTLKQEPQTD 288
            |||.....|..||....|.||..:....|           |:...|...|   :|.|..|:.:.:
Zfish    79 SKVVEMSDEPEKRSTPVGNSSQMEPETVD-----------NHVQVLKSVPVNLSLNTDHQDNKRE 132

  Fly   289 QIKPSPKVSLDNASASPSIAIAKLDEVQNSPSQAISGQDSANGS------------------GSA 335
            |....       |..|.:.|:.|. |...:......|.....|.                  ..:
Zfish   133 QYSVP-------AGESGTAAVVKA-EAHTAVFMTSGGHYRTEGEEQMRVICEQTHSFDTSTINHS 189

  Fly   336 ANGKHDVNSGLACGCGSPQGSPLANAEYELNEKGKPQQLS----VLDPAKIEIGSANGATHAEDH 396
            |.||.|..|           ||.:..|.:.|||.:...:.    :.|           .:|..| 
Zfish   190 AYGKDDHRS-----------SPESTYEDDSNEKYRSSSIGPDDFIFD-----------QSHMLD- 231

  Fly   397 KFQYILAAATSIATKNNEETLTYLNQGQSYEIKLKKIGDLSLYRDKI--LKSVIKICFHERRLQF 459
            .|||.|.|:.|:..|..|..:||||:||.|.|.|.:.......|..|  ::||:.:.|.|.:   
Zfish   232 TFQYTLEASKSLRQKQGEGPMTYLNKGQFYAITLSETSANKRLRHPISKVRSVVMVVFSEDK--- 293

  Fly   460 MEREQMQQW-----QQSRPGERIIEV-DVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIK 518
            ...||::.|     :|....:|:::: |...|:......:.:   :.|.|...||..:|..::|.
Zfish   294 NRDEQLKYWKYWHSRQHTAKQRVLDIADYKESFNTIGNIEEI---AYNAVSFTWDLNEEAKIFIT 355

  Fly   519 VNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPER 583
            |||:||:|:.:|  |.||:|..:||:||..|..|                               
Zfish   356 VNCLSTDFSSQK--GVKGLPLMIQIDTYSYNNRS------------------------------- 387

  Fly   584 TPSAGSNGKQAVHAAACQIKVFKLKGADRKHKQDREKIQKRPQSE 628
                    .:.:|.|.||||||..|||:||.: |.|:.|.|.:::
Zfish   388 --------NKPLHRAYCQIKVFCDKGAERKIR-DEERKQNRKKTK 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..624 CDD:282385 70/238 (29%)
SAM_CP2-like 739..805 CDD:188936
grhl2bXP_005159637.1 CP2 209..423 CDD:282385 76/273 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577681
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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