DRSC/TRiP Functional Genomics Resources

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Protein Alignment gem and tfcp2

DIOPT Version :9

Sequence 1:NP_610556.1 Gene:gem / 36064 FlyBaseID:FBgn0050011 Length:932 Species:Drosophila melanogaster
Sequence 2:XP_005162411.1 Gene:tfcp2 / 100001906 ZFINID:ZDB-GENE-030131-2523 Length:512 Species:Danio rerio


Alignment Length:630 Identity:216/630 - (34%)
Similarity:309/630 - (49%) Gaps:187/630 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 PLANAEYELNEKGKPQQLSVLDPAKIEIGSANGA---------------------THAEDHK--- 397
            |||:   |:.|.|..|.   .|.:...||...||                     ....|:|   
Zfish     8 PLAD---EVIESGLVQD---FDASLSGIGQELGAGAYSMSDVLALPIFKQEESNLPPESDNKILP 66

  Fly   398 FQYILAAATSIATKNNEETLTYLNQGQSYEIKL---KKIGDLSLYRDKILKSVIKICFHERRLQF 459
            |||:|.||||.|.|.::||||||||||||||::   :|:|:|.....|::||:|::.||:||||:
Zfish    67 FQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGELPEINGKMVKSIIRVVFHDRRLQY 131

  Fly   460 MEREQMQQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEVGVYIKVNCIST 524
            .|.:|::.|:.:|||:||:::|:|:|.|:  |....:...|||||..|||.|...|:|:|:||||
Zfish   132 TEHQQLEGWRWNRPGDRILDLDIPMSVGV--VDPRANPTQLNTVEFLWDPSKRTSVFIQVHCIST 194

  Fly   525 EFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNNSAIASGSGSSGSAAPASPERTPSAGS 589
            |||.:|||||||||||:||:|:.||                                    .||.
Zfish   195 EFTMRKHGGEKGVPFRIQIDTFKEN------------------------------------EAGE 223

  Fly   590 NGKQAVHAAACQIKVFKLKGADRKHKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATT 654
            . .:.:|:|:|||||||.||||||.|.||||::||...|:||:|||||.||:             
Zfish   224 Y-TEHLHSASCQIKVFKPKGADRKQKTDREKMEKRAPQEKEKYQPSYETTIL------------- 274

  Fly   655 TGCYSPEYMKLWP------NSPVHIPKYD---GMLPFAPSAASPATSSSPIAINSVTSTNSPTLK 710
            |.| ||     ||      |||  .|.::   ...|......||:....|:|..:..|.:...|:
Zfish   275 TEC-SP-----WPEATYVNNSP--SPGFNSTHNSFPVTEGNGSPSHQPEPVAQLADVSLSCHLLR 331

  Fly   711 LMDATNMVSPQHVPADMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFSGADIMRMSKEDL 775
            ....:|               ||::|.:||.:..|||..:|.:.:...|..|||||::::::||:
Zfish   332 RESESN---------------QNLLPTATPQEAQQWLHRNRFSPFCRLFTNFSGADLLKLTREDV 381

  Fly   776 IQICGLADGIRMFNILRAKTIAPRLTLYA---------------SVDGCS-----YNAIYLLSNT 820
            |||||.|||||:||.|:.:.:.||||:|.               :.||.:     |:||||...|
Zfish   382 IQICGPADGIRLFNALKGRVVRPRLTIYVCQESQQAREQHQKHENGDGTNNTFFVYHAIYLEDLT 446

  Fly   821 AKELQQKLFKMPGFYEFMAKASAQENGAGGAATAAAAALFNNWGMHSKYSGSGSNIFNDANKSCV 885
            |.||.:||                            |.||:               .:....|.:
Zfish   447 AVELTEKL----------------------------AQLFS---------------ISPRQISQI 468

  Fly   886 YISGPSGILVTITDEVLNNEIKDGSLYALEVQAGK------VILK 924
            :..||:||.|.::||::.| .:|...:.|:....:      :|||
Zfish   469 FKQGPTGIHVLVSDEMIQN-FQDEVCFVLDTMKAETNDGYHIILK 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gemNP_610556.1 CP2 393..624 CDD:282385 109/236 (46%)
SAM_CP2-like 739..805 CDD:188936 32/80 (40%)
tfcp2XP_005162411.1 CP2 57..257 CDD:282385 109/238 (46%)
SAM_TFCP2 345..411 CDD:188988 32/65 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577682
Domainoid 1 1.000 181 1.000 Domainoid score I3417
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4134
Inparanoid 1 1.050 306 1.000 Inparanoid score I2616
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001863
OrthoInspector 1 1.000 - - otm26580
orthoMCL 1 0.900 - - OOG6_104886
Panther 1 1.100 - - O PTHR11037
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4859
SonicParanoid 1 1.000 - - X1220
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.920

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