DRSC/TRiP Functional Genomics Resources

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Protein Alignment dmpd and Fbxo28

DIOPT Version :10

Sequence 1:NP_610555.1 Gene:dmpd / 36061 FlyBaseID:FBgn0033486 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_001100673.1 Gene:Fbxo28 / 305105 RGDID:1304584 Length:368 Species:Rattus norvegicus


Alignment Length:395 Identity:118/395 - (29%)
Similarity:172/395 - (43%) Gaps:103/395 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 QGNQAHSSYRVVSAGSLAESASAVTRLHSYTMQMQRQRPPTATTTTTTSAP-------------- 120
            :|...|.     ..||.:.::||         |.|...||:......:.||              
  Rat    12 EGGGGHG-----DGGSCSAASSA---------QRQPPTPPSQALQPGSQAPAAPALAPDHLPQNN 62

  Fly   121 SLYDLPNELIEKILSYVDYKKVSNLRLVSHRMNDICMAMLNTAFTKQIKTTLSRF-----QAIKA 180
            :|..||...||.|||::.|.::|.||||..||:.:|..|||..|.|     :.|:     :.:||
  Rat    63 TLVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLK-----VERYHNLCQKQVKA 122

  Fly   181 SMPRRESHRRNHPLACECDIIETCYMRLSLLQMSMGKHIERGHCCFFPGAILDEVQAILNYISIT 245
            .:|||||.||||.||...||:.....|||||.|:..|:::...|||.||.::||:..:|.|::.|
  Rat   123 QLPRRESERRNHSLARHADILAAVETRLSLLNMTFMKYVDSNLCCFIPGKVIDEIYRVLRYVNST 187

  Fly   246 PRLQRPYRVTDELFDLSTMAMEYFKDRI----EATLPGLAYFNKDFYTLPTTTKRPTLAISSDLE 306
            ...||.:.|..||.|:|:||||||.::|    :..|||                       ||:.
  Rat   188 RAPQRAHEVLQELRDISSMAMEYFDEKIVPILKRKLPG-----------------------SDVS 229

  Fly   307 DSASNSPP----------------QNHMVLRKGIRKIKQGMKMYNNQLSVLRTELRTCKRKAAEQ 355
            .....|||                ||..  |:.:.|::|.:|.....::|||.|:...:.|..||
  Rat   230 GRLMGSPPVPGPSAALTTMQLFSKQNPS--RQEVTKLQQQVKTNGAGVTVLRREISELRTKVQEQ 292

  Fly   356 SKQ-------LAEQSNLISEQQKQTLEYANRLDE-------------NDKKNEEMSRKFSTLLQE 400
            .||       |.||:.:|.||..:..|...:|.|             ..:::....||.:..:..
  Rat   293 QKQLQDQDQKLLEQTQIIGEQNARLAELERKLREVMESAVGTSSGSGQSEESPRKRRKATEAIDS 357

  Fly   401 LNKCK 405
            |.|.|
  Rat   358 LRKSK 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dmpdNP_610555.1 F-box_FBXO28 122..166 CDD:438872 21/43 (49%)
COG1340 <320..>408 CDD:440951 27/106 (25%)
Fbxo28NP_001100673.1 F-box_FBXO28 64..108 CDD:438872 21/43 (49%)

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