DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpLP0-like and AT3G09200

DIOPT Version :10

Sequence 1:NP_610554.1 Gene:RpLP0-like / 36058 FlyBaseID:FBgn0033485 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_187531.1 Gene:AT3G09200 / 820076 AraportID:AT3G09200 Length:320 Species:Arabidopsis thaliana


Alignment Length:225 Identity:63/225 - (28%)
Similarity:103/225 - (45%) Gaps:22/225 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VSLTKTDRKGLAWKQRIVDDIRFC--VGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNR 72
            |..||.::|       |..|.:.|  :.:|..|.|....|:.::.|:::|:.|:.:|..:.|||.
plant     2 VKATKAEKK-------IAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 59

  Fly    73 VMQIGLGRTKSEEV-EPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETV 136
            :|:..: |..||.. ...:..|...|.|.|||:||....:||.|....|.....||.|.||...|
plant    60 MMKRSV-RIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDV 123

  Fly   137 TLPAGPLEDFAHSMEPHLRS----LGLPTKLEKGIVTLYSDYTVCEEG-KVLTPEQARILKLVGK 196
            .:..|..     .::|...|    |.:|||:.||.|.:.:...:.::| ||.:.|.|.:.||..:
plant   124 VVQPGNT-----GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

  Fly   197 PMAKFRLTMKCSWTKSEGFQLHVEDDVNDE 226
            |.: :.|.::..:.....|...|.|...|:
plant   184 PFS-YGLVVQSVYDNGSVFSPEVLDLTEDQ 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0-likeNP_610554.1 Ribosomal_P0_like 21..184 CDD:240222 49/170 (29%)
AT3G09200NP_187531.1 PTZ00135 1..277 CDD:240285 63/225 (28%)

Return to query results.
Submit another query.