DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpLP0-like and rplp-0

DIOPT Version :10

Sequence 1:NP_610554.1 Gene:RpLP0-like / 36058 FlyBaseID:FBgn0033485 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_492766.1 Gene:rplp-0 / 172943 WormBaseID:WBGene00004408 Length:312 Species:Caenorhabditis elegans


Alignment Length:234 Identity:50/234 - (21%)
Similarity:101/234 - (43%) Gaps:34/234 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKN----R 72
            :.:.||.  .||......:.....:||...:..|.|:.:..::::||.::.::..:.|||    :
 Worm     1 MVREDRS--TWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRK 63

  Fly    73 VMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEV-LEWAENYWAVEYARSGFVATETV 136
            .::..||:      .|.|.||...:...||.:||.:...|: .:..||..... |::|.:|...|
 Worm    64 ALRGHLGK------NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAP-AKAGAIAPCDV 121

  Fly   137 TLP-----AGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGK 196
            .||     .||      ......::|.:|||:.:|.:.:.:|..:.:||..:...::.:|.::|.
 Worm   122 KLPPQNTGMGP------EKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180

  Fly   197 PMAKFRLTMKCSWTKSEGFQLHVEDDVNDEEQADSAMEE 235
            ....:.|.::         |::.:..:...|..|...||
 Worm   181 TPFSYGLVVR---------QVYDDGTLYTPEVLDMTTEE 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpLP0-likeNP_610554.1 Ribosomal_P0_like 21..184 CDD:240222 40/172 (23%)
rplp-0NP_492766.1 PTZ00135 1..312 CDD:240285 50/234 (21%)

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