DRSC/TRiP Functional Genomics Resources

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Protein Alignment egr and tnfsf13b

DIOPT Version :10

Sequence 1:NP_724878.2 Gene:egr / 36054 FlyBaseID:FBgn0033483 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001107062.1 Gene:tnfsf13b / 561268 ZFINID:ZDB-GENE-080204-44 Length:268 Species:Danio rerio


Alignment Length:290 Identity:51/290 - (17%)
Similarity:107/290 - (36%) Gaps:69/290 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 SETTAEGEGETDSAS-------SASNDDNVFDDFTSYN--AHKKKQERKSRSIADVRNEEQNIQG 225
            :|....|.||....|       :|:...:.....:.|:  |.|.:.|.....:|..|.|:..:..
Zfish     3 AEDVGPGRGERRRLSWLFLVLVAAAITSSSLSVISLYHVLALKAEVEGLRAEVARKREEQSGMLD 67

  Fly   226 NHTELQEKSSNEATSKESPAPLHHRRRMHSRHRHLLVRKGESLLSARSEDSRPAAHFHLSSRRRH 290
            ......||.::.....:|...||        ...:.:....|::|.||..       |..::...
Zfish    68 EPVNEAEKQTHREEGGDSIEYLH--------QADMDITTDPSVMSKRSLS-------HAPNKAEP 117

  Fly   291 QGSMGYHGDMYIGNDNERNSYQGHF--------------------QTRDGVLTVTNTGLYYVYAQ 335
            |..      :.:..||::.::|..|                    :...|.:.|...|.:::|:|
Zfish   118 QPC------LQMMADNKKKTFQKEFAFDYCTAIPWQVGLKRGSALEEEQGTILVKEEGFFFIYSQ 176

  Fly   336 ICYNNSHDQN-----GFIVFQ------GD----TPFLQCLNTVPTNMPHKVHTCHTSGLIHLERN 385
            :.::..:..:     |.||.:      |:    ....:|:.::  |..:..:||:|.|::.|:..
Zfish   177 LSFSQVYYTDPTFAMGHIVIRIKKNVVGNESQHVVLFRCIQSM--NRVNHYNTCYTGGVVKLDSG 239

  Fly   386 ERIHLKDIHNDRNAVLREGNNRSYFGIFKV 415
            :::.|.....:.|..| || :.::.|..|:
Zfish   240 DKLDLLIPRANANISL-EG-DATFLGAIKL 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egrNP_724878.2 TNF 278..413 CDD:238108 28/169 (17%)
tnfsf13bNP_001107062.1 TNF <154..265 CDD:444713 22/114 (19%)

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