DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment egr and Eda

DIOPT Version :10

Sequence 1:NP_724878.2 Gene:egr / 36054 FlyBaseID:FBgn0033483 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001292172.1 Gene:Eda / 302424 RGDID:1563178 Length:391 Species:Rattus norvegicus


Alignment Length:151 Identity:42/151 - (27%)
Similarity:73/151 - (48%) Gaps:16/151 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 SEDSRPAAHFHLSSRRRHQGS-MGYHGDMYIG--NDNER---NSYQGHFQTRDGVLTVTNTGLYY 331
            :.:::||. .||..    ||| :....|:..|  ||..|   |........|.|.|.|...|.|:
  Rat   243 TRENQPAV-VHLQG----QGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYF 302

  Fly   332 VYAQ--ICYNNSHDQNGFIVFQGDTPFLQCLNTVPTNMPHKVHTCHTSGLIHLERNERIHLKDIH 394
            :|:|  :.|.|..|...:.|...:.|||||..::.|...: .:||:|:|:..|:..::|.:|.:|
  Rat   303 IYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTN-YNTCYTAGVCLLKARQKIAVKMVH 366

  Fly   395 NDRNAVLREGNNRSYFGIFKV 415
            .|.:  :....:.::||..::
  Rat   367 ADIS--INMSKHTTFFGAIRL 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
egrNP_724878.2 TNF 278..413 CDD:238108 42/142 (30%)
EdaNP_001292172.1 TNF 249..383 CDD:238108 41/141 (29%)

Return to query results.
Submit another query.