DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdc2rk and lsk1

DIOPT Version :9

Sequence 1:NP_523674.1 Gene:Cdc2rk / 36051 FlyBaseID:FBgn0013435 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_594393.1 Gene:lsk1 / 2541672 PomBaseID:SPAC2F3.15 Length:593 Species:Schizosaccharomyces pombe


Alignment Length:356 Identity:133/356 - (37%)
Similarity:203/356 - (57%) Gaps:30/356 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QAPITRKGFLMSLNTGTPMPIPEQ---NLFGRCRPVSEFEKLNRVGEGSYGIVYRARDTRSNEIV 79
            |.|..|.....:.....|.|:|..   .::....|...:||::::|||:||.||:|.:|.:.::|
pombe   239 QPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGDLV 303

  Fly    80 ALKKVRMDQEKDGLPISGLREIMILKQCHHENIVRLREVVVGKSLDSIFLVMDFCEQDLASVLDN 144
            |||::|::|||||.||:.:||:.||::..|:|||||.|::|.||  |:::|.::.:.||..||.|
pombe   304 ALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMVEKS--SVYMVFEYMDHDLTGVLLN 366

  Fly   145 MSQPFTESEVKCITLQVLKALKYLHSRFMIHRDLKVSNLLMTDKGCIKVADFGLARMFSNPPKP- 208
            ....||...:|.::.|:.:||.|||.|.::|||:|.||:|:.:.|.:|.||||||| |:...|. 
pombe   367 SQLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDLKFADFGLAR-FNTSSKSA 430

  Fly   209 -MTPQMVTLWYRAPELLLGCRTHTTAVDMWAFGCILGELLLGKPLLPGNSEIAQLDMIIDLLGAP 272
             .|.:::|||:|.||||||...:.||||:|:.|||:.||..|||...|..||:||::|.|::|.|
pombe   431 NYTNRVITLWFRPPELLLGETAYDTAVDIWSAGCIVMELFTGKPFFQGRDEISQLEVIYDMMGTP 495

  Fly   273 SESIWPGFADLPAVQNFTLSQQPYNNLTPKF-HMIGQSGRNLLNILFIYNPKTRATAEECLKSKY 336
            ....||...:||..:.....::..:.....| .::..:..:|...|...||..|.:|.|.|..:|
pombe   496 DVHSWPEVKNLPWYELLKPVEEKKSRFVETFKEILSPAAIDLCQKLLALNPFCRPSAHETLMHEY 560

  Fly   337 FV--DPPQACDPGMMPTFPQHRNNAAPAPAV 365
            |.  .||                   |.|||
pombe   561 FTSESPP-------------------PEPAV 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdc2rkNP_523674.1 STKc_CDK10 45..353 CDD:173742 123/312 (39%)
S_TKc 53..337 CDD:214567 118/286 (41%)
lsk1NP_594393.1 STKc_CDK9_like 277..561 CDD:270832 118/286 (41%)
S_TKc 277..561 CDD:214567 118/286 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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