DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment magu and nid2a

DIOPT Version :9

Sequence 1:NP_610548.2 Gene:magu / 36048 FlyBaseID:FBgn0262169 Length:613 Species:Drosophila melanogaster
Sequence 2:XP_005169904.1 Gene:nid2a / 322921 ZFINID:ZDB-GENE-030827-2 Length:1804 Species:Danio rerio


Alignment Length:710 Identity:143/710 - (20%)
Similarity:227/710 - (31%) Gaps:258/710 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 PVCGTDGQTYPTRCHLLRAQC-----------------GGHQVSLKYSGSCNACLEAVKFARR-Q 90
            |.|..:||..|.:||.....|                 |..:|:         |.:.|....| :
Zfish   937 PQCDEEGQYRPQQCHGSTGHCWCVDNRGQERAGTRTPPGSPR
VN---------CDQPVHLRTRCE 992

  Fly    91 QERDP-----------GYFVPRCRKDGNFAAMQCYGNNG-CWCSDSQGRPIADDNKQFRRKG--- 140
            |.||.           |.|:|:|.::|.:...||:|:.| |||.|::|:         .|.|   
Zfish   993 QHRDSLQSGDGGVPAVGAFIPQCDEEGQYRPQQCHGSTGHCWCVDNRGQ---------ERAGTRT 1048

  Fly   141 -----KLRCRANRRDRRRLASHQ------------IG-----------YNPDTSASKGSSEAGST 177
                 ::.|....|.:.....|:            :|           |.|...       .|||
Zfish  1049 PPGSPRVNCDQPVRPKTHCEQHRDSLQSGDGGIPVVGAFIPQCDEEGQYRPQQC-------HGST 1106

  Fly   178 AHRTCSKSDRSQFNTNLMRMFRNEAQSFFR-----------QPSLSDSHILEWQFSKLDTNGNKL 231
            .|..|..|             |.:.::..|           ||..|.:|..:.:.|....:|...
Zfish  1107 GHCWCVDS-------------RGQERAGTRTPPGSPRVNCDQPVRSKTHCEQHRDSLQSGDGGVP 1158

  Fly   232 LDRQEIRELKKVLRRNVKPRRCGRTFGKYCDVTKDANLNWLEWSVCFTKEFHNRSAVVNLLASSA 296
            :....|.:..:  ....:|::|..:.| :|            |.|      .||..     ..:.
Zfish  1159 VVGAFIPQCDE--EGQYRPQQCHGSTG-HC------------WCV------DNRGQ-----ERAG 1197

  Fly   297 ATAPPHSTHYSIHNTNVNGHHRGHTNTIGTGVNPHSYSEDASGSEEHEDNYEDSATGYG------ 355
            ...||.|..                      ||........:..|:|.|:.:....|..      
Zfish  1198 TRTPPGSPR----------------------VNCDQPVRPKTQCEQHRDSLQSGNDGVPVVGAFI 1240

  Fly   356 ---GEED-----------------DSQGADLPSSRTHIPSLYMLNSKPETASQDLENDSNCWMDQ 400
               .||.                 |::|.:...:||. |....:|     ..|.:...:.|  :|
Zfish  1241 PQCDEEGQYRTQQCHGSTGHCWCVDNRGQERAGTRTP-PGSPRVN-----CDQPVRPKTQC--EQ 1297

  Fly   401 SVTLEEQGHGGKSVL--FVPQCLPDGRYQRIQCYSSTSTSYCWCVNEDTGKSIPGTSVK--NKRP 461
            .....:.|:.|..|:  |:|||..:|:|:..||:.  ||.:|||| ::.|:...||...  :.|.
Zfish  1298 HRDSLQSGNDGVPVVGAFIPQCDEEGQYRTQQCHG--STGHCWCV-DNRGQERAGTRTPPGSPRV 1359

  Fly   462 QCDESVAVRPMKGCTEPRKT------------QFLKELKAYLNTSLLPSSTTGSNSSMWKTD--- 511
            .||:  .|||...|.:.|.:            .|:.:...  .....|....||....|..|   
Zfish  1360 NCDQ--PVRPKTQCEQHRDSLQSGDGGVPAVGAFIPQCDE--EGQYRPQQCHGSTGHCWCVDSRG 1420

  Fly   512 DERIATLS------------FVYLDKNKNKSWDRREWKNFRDLVTSASHLRRCGKK------MPR 558
            .||..|.:            .:.....:.:|...| |:        ||.|::.|.:      :|:
Zfish  1421 QERAGTRTPPGSPRVNCDQPVIVPPTQRPESVCER-WR--------ASLLQQYGGQPDSQHYLPQ 1476

  Fly   559 YCDVNGD----KKISLAEWLNCLQATPRE-----SATTAKPAQSNETASPKFQGVNPVER 609
             ||..|:    :....:.:..|:.|..||     |....|||.....|||.   |:|:.|
Zfish  1477 -CDSAGEFNPVQCYGGSSYCWCVDANGREVPGTRSHDAVKPACIPTVASPT---VHPLPR 1532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
maguNP_610548.2 KAZAL_FS 38..77 CDD:238052 10/49 (20%)
TY 88..139 CDD:238114 18/63 (29%)
SPARC_Ca_bdg 180..274 CDD:287550 15/104 (14%)
SPARC_EC <219..281 CDD:238155 9/61 (15%)
TY 396..463 CDD:238114 23/70 (33%)
nid2aXP_005169904.1 NIDO 113..278 CDD:214712
EGF_3 442..470 CDD:289699
nidG2 474..697 CDD:238158
EGF_3 710..746 CDD:289699
EGF_CA 748..790 CDD:214542
EGF_3 799..828 CDD:289699
Thyroglobulin_1 839..905 CDD:278514
Thyroglobulin_1 915..978 CDD:278514 9/40 (23%)
Thyroglobulin_1 991..1054 CDD:278514 19/71 (27%)
Thyroglobulin_1 1067..1130 CDD:278514 12/82 (15%)
Thyroglobulin_1 1143..1206 CDD:278514 14/88 (16%)
Thyroglobulin_1 1219..1282 CDD:278514 11/63 (17%)
Thyroglobulin_1 1295..1358 CDD:278514 22/67 (33%)
Thyroglobulin_1 1371..1434 CDD:278514 11/64 (17%)
TY 1453..1518 CDD:238114 17/74 (23%)
LY 1569..1606 CDD:214531
LY 1612..1654 CDD:214531
LY 1655..1699 CDD:214531
LY 1700..1742 CDD:214531
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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