DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and PCH2

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_009745.2 Gene:PCH2 / 852484 SGDID:S000000390 Length:564 Species:Saccharomyces cerevisiae


Alignment Length:516 Identity:110/516 - (21%)
Similarity:180/516 - (34%) Gaps:182/516 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 HSEQDEKMKPKDSFDKREDLATAILKR------KDRPNRLIV-------------------EEAQ 54
            ||..|.|........:..:|..|::||      |||....|:                   .|||
Yeast    31 HSGSDSKQNSNKKLGEFLNLLKAVVKRKLESFPKDRLKTSIITGQELMREGQGSIEIKDPPTEAQ 95

  Fly    55 NDDNSVVSLSQAKMDELQLFRG---------DTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVV 110
              .:.:.||::..:.:.....|         |.:.|....:|    |.:...:.....|::|...
Yeast    96 --QHLIRSLAKVLLHQFSSINGKVNTVNEGQDNLFLSLFVKK----ISIEQQSTSHVSIKLNFHE 154

  Fly   111 RNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMG--DN 173
            :.||..|:..                 ||..:|:.|..|                  .|||  |.
Yeast   155 KINLGQHIDS-----------------ILDSEETNESDT------------------YHMGSVDE 184

  Fly   174 FIVRAAMRPIEFKVVLTDPEPYCIVAPE------TVIFCDGDPIKREEEEES----------LNA 222
            ||:                .|:|.:..:      :::..:.|.|..|.:|:.          :|:
Yeast   185 FII----------------YPFCCLEEQDELKNGSILSTEFDKIDLELDEDDGFEGETLNNCINS 233

  Fly   223 VGYDDIGGCRKQL-----------------------AQIKE------MVELPLRHPSLFKAIG-- 256
            ||..||...::.|                       ..|||      .:.|.:   :.||..|  
Yeast   234 VGNFDIPLSKQTLNLVNISYLPGTTFEGQWESLYFGNNIKERLYSYATISLKI---ARFKQTGDS 295

  Fly   257 --------VKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPE-----------------I 296
                    :...:.:|::||||||||.:.:|:..:........:|.:                 |
Yeast   296 NQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGIIIELSCARI 360

  Fly   297 MSKLAGESESNLRKAFEEAEK----NSPAIIF----IDEIDAIAPKRDKTHGEVER----RIVSQ 349
            .||..|||..|:...|::.|:    |....||    |||::|||..|.......|.    |:|:.
Yeast   361 FSKWFGESSKNISIVFKDIEELLKVNEGRGIFICLLIDEVEAIASSRTNLSSRNESTDGIRVVNT 425

  Fly   350 LLTLMDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNM 410
            |||.:|.:||..:.:.:|.:|..:|:|.|.  ..|.|....:|.|.|.|.|.:|::..:.|
Yeast   426 LLTQLDRLKKYHNFLALATSNLLDSLDDAF--VDRADGVFYVGNPTAEGILHILKVCIEEM 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 99/478 (21%)
CDC48_N 47..129 CDD:280513 16/109 (15%)
CDC48_2 153..213 CDD:215011 10/67 (15%)
AAA 263..392 CDD:278434 46/157 (29%)
AAA 536..669 CDD:278434
Vps4_C <741..783 CDD:286426
PCH2NP_009745.2 SpoVK 1..487 CDD:223540 110/516 (21%)
P-loop_NTPase 248..465 CDD:422963 53/221 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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