DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and CIP111

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_191228.1 Gene:CIP111 / 824836 AraportID:AT3G56690 Length:1022 Species:Arabidopsis thaliana


Alignment Length:628 Identity:241/628 - (38%)
Similarity:369/628 - (58%) Gaps:99/628 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 IGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLIN 292
            :||..|:.|.::::::......|| .::|::|.:|:|::||||||||.:||..|..:|..||.:|
plant   387 LGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVN 450

  Fly   293 GPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGM 357
            ||||:|:..||||..|.:.|..|...:||::|||::|||||.|.:...|:.:|:|:.||.||||:
plant   451 GPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEELSQRMVATLLNLMDGI 515

  Fly   358 KKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLH--DDVDLEQ 420
            .::..::|:||||||:||:|||||.||.||||:||:|.:|.|.::|.|..:.|: |  .::.:||
plant   516 SRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMR-HSLSNIQVEQ 579

  Fly   421 IAAESHGHVGADLASLCSEAALQQIREKMD---------------------LIDLEDDKIDA--- 461
            :|..:||.|||||::||.|||...:|..:|                     :.|:..|..|:   
plant   580 LAMATHGFVGADLSALCCEAAFVCLRRHLDQSSSSSNLPLEEAPIAESSSNMSDISSDSSDSASS 644

  Fly   462 ------------------EVLA------------------------SLAVTMENFRYAMTKSSPS 484
                              |.::                        :|:|..|:|..|.||..||
plant   645 CITISATTSGAQRSFSLDETVSLVADDIQNNGNSCSEQMLRKQGEHTLSVGFEDFENAKTKIRPS 709

  Fly   485 ALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLL 549
            |:||.::|||...|.|:||...||.:|.|.|::|.:|.|.|.:.|.:|..|:|.:|||||.|||:
plant   710 AMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLM 774

  Fly   550 AKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGD 614
            |:|:|:|.:.||::||||||.:.|.||||..||.:|.|||:.||.::||||:||:|..| |...|
plant   775 ARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIR-GKEND 838

  Fly   615 AGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAIL 679
            ....:|||::|:|.|:||:..:..|.:|.||||||.||.|:|||||.|:|:|:..|::..|||||
plant   839 GVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAIL 903

  Fly   680 KANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMD 744
            |.:|||.|.:.::.|..:|.:|:|::|||::.||:.|...|:.:::|.|                
plant   904 KIHLRKIPCSSDICLKELASITKGYTGADISLICREAAIAALEESLEME---------------- 952

  Fly   745 MDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 787
                    ||:..|    :|.|...:...:|..|:..::..|:
plant   953 --------EISMRH----LKAAISQIEPTEILSYKALSEKFQR 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 240/626 (38%)
CDC48_N 47..129 CDD:280513
CDC48_2 153..213 CDD:215011
AAA 263..392 CDD:278434 68/128 (53%)
AAA 536..669 CDD:278434 71/132 (54%)
Vps4_C <741..783 CDD:286426 7/41 (17%)
CIP111NP_191228.1 SpoVK 413..979 CDD:223540 234/595 (39%)
AAA 421..551 CDD:278434 69/129 (53%)
AAA 761..892 CDD:278434 71/131 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D194195at2759
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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