DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TER94 and CDC48C

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001326134.1 Gene:CDC48C / 821105 AraportID:AT3G01610 Length:830 Species:Arabidopsis thaliana


Alignment Length:792 Identity:285/792 - (35%)
Similarity:419/792 - (52%) Gaps:99/792 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 RPNRLIVEEAQNDD--NSVVSLSQAK----MDELQ--LFRGDTVILKGKRRKETVCIVLSDDTCP 100
            |.|:.:.:|.::|:  :...|.||.|    :||.:  |.|.:...|:.:..:.:|....|..:..
plant    68 RNNKRVKDEDEDDNIGDEEGSASQRKKQRRVDEKEEKLQRAEQSHLRKRNMERSVSSSPSSSSSS 132

  Fly   101 DEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRV---RILPIDESTEGVTGNLFEIYLKPYFL 162
            :                  |...|.:..|..||:::   |...|::|.......|.....||...
plant   133 E------------------DSGDVSTSEDAVYGEKLSPPRFDLINDSLRDNYAKLNSSSKKPIGS 179

  Fly   163 EAYRPIHM------GDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLN 221
            .|.:.:.:      |.:.:.....|. |.||.|:               ..|.....:.|.|...
plant   180 PAEKNVEVETVSNKGRSKLATMGARK-EAKVSLS---------------LSGATGNGDLEVEGTK 228

  Fly   222 AVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGA 286
            ...:.|.||.:|.|.:::..|..|:.:|..||.||||||.|||.:||||.|||.:|.|:|||.|.
plant   229 GPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGV 293

  Fly   287 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLL 351
            .|:.|:..|::|.::|.||.|:|:.|.:|.:.:|:|:||||||||..||:....|:|:|||:|||
plant   294 PFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLL 358

  Fly   352 TLMDGM----------KKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIH 406
            |.|||.          ..:..::|:.|||||:::||||||.|||:.||.:..||...|.|:|.:.
plant   359 TCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVV 423

  Fly   407 TKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLI------DLEDDKI------ 459
            .:.::|....|.::||..:.|.|||||.|:...|..:.|:..:|..      |.||||.      
plant   424 AQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDDKSWLRMPW 488

  Fly   460 DAEVLASLAVTMENFRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDK 524
            ..|.|..|.|.|.:|..|:.....|..||....||:..|.|:|||:.::.:....:..|::.||.
plant   489 PEEELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDI 553

  Fly   525 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 589
            :..||:....|.|.||||||||||:|||.|||..|||:.:||.|||..:.||||..:|.:|.:||
plant   554 YKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRAR 618

  Fly   590 SAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPA 654
            :.||||:||||:|::..:||   .:.....:|::||.|.|:|| |.::||::||||||||::|||
plant   619 TCAPCVIFFDEVDALTTSRG---KEGAWVVERLLNQFLVELDG-GERRNVYVIGATNRPDVVDPA 679

  Fly   655 ILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVT-QGFSGADLTEICQRACK 718
            .|||||...|:|:|||:...|.:||||..||.|:...|||..|||.. :|||||||..:.|:|..
plant   680 FLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATF 744

  Fly   719 LAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEIT-----SAHFEEAMKFARRSVSDNDIRKY 778
            .|:.:.|               .:.:..||| |.:||     :.|||:|:.....||:....|.|
plant   745 QAVEEMI---------------GSSESSEDD-VTDITQCTIKTRHFEQALSLVSPSVNKQQRRHY 793

  Fly   779 EMFAQTLQQSRG 790
            :..:..||:|.|
plant   794 DALSTKLQESVG 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 280/784 (36%)
CDC48_N 47..129 CDD:280513 15/89 (17%)
CDC48_2 153..213 CDD:215011 10/65 (15%)
AAA 263..392 CDD:278434 67/138 (49%)
AAA 536..669 CDD:278434 72/132 (55%)
Vps4_C <741..783 CDD:286426 14/46 (30%)
CDC48CNP_001326134.1 CDC48 <223..808 CDD:273521 251/603 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D194195at2759
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.