DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and Pex1

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001102690.1 Gene:Pex1 / 500006 RGDID:1559939 Length:1283 Species:Rattus norvegicus


Alignment Length:703 Identity:201/703 - (28%)
Similarity:325/703 - (46%) Gaps:109/703 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 DPIKREEEEE---SLNAVGYDDIGGCRKQLAQIKE-----MVELPLRHPSLFKAIGVKPPRGILM 265
            :|:..|..||   .|.::....:||.........|     ::..||....:....|:: ...:|:
  Rat   534 EPMIGEHSEEIDILLPSLTLSSLGGVSSLSVSAMEHITHSLLGRPLSRQLMALVAGLR-NGALLI 597

  Fly   266 YGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFID 326
            .|..|:||:.:|:|:..|.    .|...:::...:..|.....:..|..||.||....|::|.:|
  Rat   598 TGGKGSGKSTLAKAICKEAHDALDAHVEMVDCKALRGKRLESIQKALEVAFSEAAWRQPSVILLD 662

  Fly   327 EIDAIA-----PKRDKTHGEVE-RRIVSQLLTLMDGMKKSSHLIVMAATNR-PNSIDPAL---RR 381
            ::|.||     |:.:.:...|: :|:...|..::........|:.:.||:: .:|:.|:|   :.
  Rat   663 DLDLIAGLPSTPEHEHSPEAVQSQRLAHALNNMIKEFVSMGSLVALIATSQLQHSLHPSLVSAQG 727

  Fly   382 FGRFDREIDIGIPDATGRLEVLRIHTKN-----MKLHDDVDLEQIAAESHGHVGADLASLCSEAA 441
            ...|.....|..||...|.|:|....||     :....|:||:.||.|:...|..|...|...|.
  Rat   728 VHTFQCIQHIQPPDQEQRCEILHSVVKNKLGCDISKSPDLDLKCIAKETEAFVARDFTVLVDRAI 792

  Fly   442 LQQIREKMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVEVP-NTTWTDIGGLE 505
            ...:..:.:           .....|.:|..:|:.|:....|::||...:..| :..|..||||.
  Rat   793 HSSLSRQQN-----------PTREGLTLTTADFQKALRGFLPASLRNVNLHKPRDLGWDKIGGLH 846

  Fly   506 SVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 570
            .|::.|.:.:|.|.::|:.|....::...|:|.|||||.||||||..:|.|...||||::|||||
  Rat   847 EVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIQGPELL 911

  Fly   571 TMWFGESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGA 635
            :.:.|.||..|||:|.:|::|.||:|||||.:|||..||   .|..|..|||:||:||::||:..
  Rat   912 SKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRG---HDNTGVTDRVVNQLLTQLDGVEG 973

  Fly   636 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKV 700
            .:.|:::.||:|||:||||:|||||||:.:|.|.||..||..||....:..|||.:|||.::|.|
  Rat   974 LQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLPLADDVDLQHVASV 1038

  Fly   701 TQGFSGADLTEICQRACKLAIR------------QAIEAEIRREKERAENQNSAMD--------- 744
            |:.|:||||..:...|...|::            .:.::::........|.:|..|         
  Rat  1039 TESFTGADLKALLYNAQLEALQGRLLPGGLHDGGSSSDSDLSLSSMVFLNHSSGSDDSAGDGECG 1103

  Fly   745 -------MDEDDPVPE----------ITSAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRG-- 790
                   ::..:.:|:          ..|::..|....|...:|.:.:.......|.|..:.|  
  Rat  1104 LDQSLVSLEMSEILPDESKFNMYRLYFGSSYESELGNGASCDLSSHCLSAPSSMTQDLPATPGKD 1168

  Fly   791 --FGQN--FRFPGQTGN----------------------TSGSGNNLPVNSPG 817
              |.|:  ||.|.|.|:                      .|.||.:..:|.||
  Rat  1169 PLFTQHPVFRTPSQEGSQDLTQEQRDQLRADISIIKGRYQSQSGEDESLNQPG 1221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 187/643 (29%)
CDC48_N 47..129 CDD:280513
CDC48_2 153..213 CDD:215011 1/3 (33%)
AAA 263..392 CDD:278434 32/142 (23%)
AAA 536..669 CDD:278434 73/132 (55%)
Vps4_C <741..783 CDD:286426 7/67 (10%)
Pex1NP_001102690.1 PEX-2N 19..98 CDD:286362
PEX-1N 104..179 CDD:286361
AAA 591..741 CDD:214640 33/150 (22%)
AAA 595..724 CDD:278434 31/128 (24%)
AAA 877..1009 CDD:214640 74/134 (55%)
AAA 877..1006 CDD:278434 73/131 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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