DRSC/TRiP Functional Genomics Resources

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Protein Alignment TER94 and Spast

DIOPT Version :9

Sequence 1:NP_001097249.1 Gene:TER94 / 36040 FlyBaseID:FBgn0286784 Length:826 Species:Drosophila melanogaster
Sequence 2:XP_008762708.1 Gene:Spast / 362700 RGDID:1308494 Length:614 Species:Rattus norvegicus


Alignment Length:547 Identity:146/547 - (26%)
Similarity:236/547 - (43%) Gaps:128/547 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 AGESESNL---RKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVE-----RRIVSQLLT----- 352
            ||:.|..:   :|..||.||....|:               .|:.|     ||:.::::|     
  Rat   137 AGQKEQAVEWYKKGIEELEKGIAVIV---------------TGQGEQYERARRLQAKMMTNLVMA 186

  Fly   353 -----LMDGMK------KSSHLIVMAATNR--------------PNSIDPALRRFGRFDREIDIG 392
                 |::.::      ||...:...:||.              |...||.........|...:.
  Rat   187 KDRLQLLEKLQPVLQFSKSQTDVYNESTNLTCRNGHLQSESGAVPKKKDPLTHASNSLPRSKTVM 251

  Fly   393 IPDATGRLEVLRIHTKNMKLHDDVDLEQIAAESHGHVGADLASLCSEAALQ------------QI 445
            ...:||    |..|      |.......::..|....|:..|:...:...:            .:
  Rat   252 KSGSTG----LSGH------HRAPSCSGLSMVSGARPGSGPAATTHKGTSKPNRTNKPSTPTTAV 306

  Fly   446 REKMDLIDLEDDKIDAEVLASLAVTMENFRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKE 510
            |:|.||                    :|||...:..:...:.|.|.......:.||.|.|..|:.
  Rat   307 RKKKDL--------------------KNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQA 351

  Fly   511 LQELVQYPVEHPDKFLKFGMQ-PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 574
            |||:|..|...|:.|.  |:: |:||:|.:||||.|||:||||:|.|..|.|.::....|.:.:.
  Rat   352 LQEIVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 414

  Fly   575 GESEANVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGM--GAKK 637
            ||.|..||.:|..||...|.::|.||:||:...|.....|   |:.|:..:.|.|.||:  ....
  Rat   415 GEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDD 476

  Fly   638 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRK--SPLAKEVDLTYIAKV 700
            .|.::||||||..:|.|:||  |..:.:|:.||::::|..:||..|.|  |||.:: :|..:|::
  Rat   477 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARM 538

  Fly   701 TQGFSGADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKF 765
            |.|:||:|||.:.:.|....||:.       :.|:.:|. ||.:|      ..|..:.|.|::|.
  Rat   539 TDGYSGSDLTALAKDAALGPIREL-------KPEQVKNM-SASEM------RNIRLSDFTESLKK 589

  Fly   766 ARRSVSDNDIRKYEMFAQTLQQSRGFG 792
            .:||||...:..|      ::.::.||
  Rat   590 IKRSVSPQTLEAY------IRWNKDFG 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TER94NP_001097249.1 CDC48 47..787 CDD:273521 144/540 (27%)
CDC48_N 47..129 CDD:280513
CDC48_2 153..213 CDD:215011
AAA 263..392 CDD:278434 23/128 (18%)
AAA 536..669 CDD:278434 52/134 (39%)
Vps4_C <741..783 CDD:286426 12/41 (29%)
SpastXP_008762708.1 MIT_spastin 114..193 CDD:239142 14/70 (20%)
P-loop_NTPase 339..>395 CDD:304359 28/57 (49%)
AAA 372..508 CDD:214640 56/140 (40%)
AAA 376..506 CDD:278434 52/134 (39%)
Vps4_C <578..610 CDD:286426 9/37 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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